8GRQ | pdb_00008grq

Deposited: 2022-09-02 Released: 2023-04-12
Deposition Author(s): Ai, H.S., Zebin, T., Zhiheng, D., Jiakun, T., Liying, Z., Jia-Bin, L., Man, P., Liu, L.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

(2023) Chem

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone H3	A, E	98	Homo sapiens	Mutation(s): 0 Gene Names: CALMAC_LOCUS17614
UniProt & NIH Common Fund Data Resources
Find proteins for Q71DI3 (Homo sapiens) Explore Q71DI3 Go to UniProtKB: Q71DI3
PHAROS: Q71DI3 GTEx: ENSG00000183598 ENSG00000203811 ENSG00000203852
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q71DI3
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Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone H4	B, F	80	Homo sapiens	Mutation(s): 0 Gene Names: Dana\GF27365, Dana_GF27365, GF27365
UniProt & NIH Common Fund Data Resources
Find proteins for P62805 (Homo sapiens) Explore P62805 Go to UniProtKB: P62805
PHAROS: P62805 GTEx: ENSG00000274618 ENSG00000197238 ENSG00000197837 ENSG00000158406 ENSG00000278705 ENSG00000197061 ENSG00000270882 ENSG00000270276 ENSG00000273542 ENSG00000277157 ENSG00000276966 ENSG00000276180 ENSG00000278637 ENSG00000275126
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P62805
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone H2A type 1-H	C, G	110	Homo sapiens	Mutation(s): 0 Gene Names: H2ac12, Hist1h2ah
UniProt & NIH Common Fund Data Resources
Find proteins for P04908 (Homo sapiens) Explore P04908 Go to UniProtKB: P04908
PHAROS: P04908 GTEx: ENSG00000277075 ENSG00000278463
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P04908
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
H2B	D, H	188	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for O60814 (Homo sapiens) Explore O60814 Go to UniProtKB: O60814
PHAROS: O60814 GTEx: ENSG00000197903
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O60814
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Reference Sequence

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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Breast cancer type 1 susceptibility protein	K	92	Homo sapiens	Mutation(s): 0 Gene Names: BRCA1, RNF53 EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for P38398 (Homo sapiens) Explore P38398 Go to UniProtKB: P38398
PHAROS: P38398 GTEx: ENSG00000012048
Entity Groups
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UniProt Group	P38398
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Reference Sequence

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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
BRCA1-associated RING domain protein 1	L [auth M]	92	Homo sapiens	Mutation(s): 0 Gene Names: BARD1 EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q99728 (Homo sapiens) Explore Q99728 Go to UniProtKB: Q99728
PHAROS: Q99728 GTEx: ENSG00000138376
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q99728
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Reference Sequence

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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast), isoform CRA_a	M [auth N]	147	Homo sapiens	Mutation(s): 0 Gene Names: UBE2D3, hCG_2028213 EC: 2.3.2.24 (UniProt), 2.3.2.23 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P61077 (Homo sapiens) Explore P61077 Go to UniProtKB: P61077
PHAROS: P61077 GTEx: ENSG00000109332
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P61077
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 5
DNA (147-MER)	I	147	Homo sapiens
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 6
DNA (147-MER)	J	147	Homo sapiens
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Reference Sequence

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN (Subject of Investigation/LOI) Query on ZN Download:Ideal Coordinates CCD File SDF format, chain Q [auth M] SDF format, chain P [auth M] SDF format, chain O [auth K] SDF format, chain N [auth K] MOL2 format, chain Q [auth M] MOL2 format, chain P [auth M] MOL2 format, chain O [auth K] MOL2 format, chain N [auth K] mmCIF format, chain Q [auth M] mmCIF format, chain P [auth M] mmCIF format, chain O [auth K] mmCIF format, chain N [auth K]	N [auth K], O [auth K], P [auth M], Q [auth M]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain N [auth K] Focus chain O [auth K] Focus chain P [auth M] Focus chain Q [auth M] Interactions & Density Focus chain N [auth K] Focus chain O [auth K] Focus chain P [auth M] Focus chain Q [auth M]