8HGJ | pdb_00008hgj

Toxascaris leonina galectin (Tl-gal) and Human T-cell immunoglobulin mucin-3 (Tim3) complex

PDB DOI: https://doi.org/10.2210/pdb8HGJ/pdb
EM Map EMD-34740: EMDB EMDataResource

Classification: IMMUNE SYSTEM
Organism(s): Toxascaris leonina, Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-11-14 Released: 2023-11-22
Deposition Author(s): Han, C.W., Jang, S.B.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.82 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8HGJ

This is version 1.1 of the entry. See complete history.

Literature

Toxascaris leonina galectin (Tl-gal) and Human T-cell immunoglobulin mucin-3 (Tim3) complex

Han, C.W., Jang, S.B.

To be published.

Macromolecule Content

Total Structure Weight: 43.58 kDa
Atom Count: 3,073
Modeled Residue Count: 385
Deposited Residue Count: 385
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Galectin	A	278	Toxascaris leonina	Mutation(s): 0
UniProt
Find proteins for A0A1L1QJZ7 (Toxascaris leonina) Explore A0A1L1QJZ7 Go to UniProtKB: A0A1L1QJZ7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A1L1QJZ7
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Hepatitis A virus cellular receptor 2	B	107	Homo sapiens	Mutation(s): 0 Gene Names: HAVCR2, TIM3, TIMD3
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TDQ0 (Homo sapiens) Explore Q8TDQ0 Go to UniProtKB: Q8TDQ0
PHAROS: Q8TDQ0 GTEx: ENSG00000135077
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8TDQ0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.82 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-11-22

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2023-11-22
Type: Initial release
Version 1.1: 2024-10-09
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.