8OSK

CLOCK-BMAL1 bound to a nucleosome SHL+5.8


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

To be published.

Xzy, X.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H3.1
A, E
139Homo sapiensMutation(s): 0 
Gene Names: 
UniProt & NIH Common Fund Data Resources
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PHAROS:  P68431
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UniProt GroupP68431
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H4
B, F
106Homo sapiensMutation(s): 0 
Gene Names: 
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PHAROS:  P62805
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UniProt GroupP62805
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H2A type 1-B/E
C, G
133Homo sapiensMutation(s): 0 
Gene Names: HIST1H2ABH2AFMHIST1H2AEH2AFAH2AC4H2AC8
UniProt & NIH Common Fund Data Resources
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UniProt GroupP04908
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H2B type 1-J
D, H
128Homo sapiensMutation(s): 0 
Gene Names: HIST1H2BJH2BFRH2BC11
UniProt & NIH Common Fund Data Resources
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Circadian locomoter output cycles protein kaputK [auth M]375Mus musculusMutation(s): 0 
Gene Names: Clock
EC: 2.3.1.48
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IMPC:  MGI:99698
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UniProt GroupO08785
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
Basic helix-loop-helix ARNT-like protein 1L [auth N]384Mus musculusMutation(s): 0 
Gene Names: Bmal1Arntl
UniProt
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UniProt GroupQ9WTL8
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Entity ID: 5
MoleculeChainsLengthOrganismImage
DNA (124-MER)153synthetic construct
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Entity ID: 6
MoleculeChainsLengthOrganismImage
DNA (124-MER)153synthetic construct
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTRosettaEM
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union884331
Human Frontier Science Program (HFSP)FranceLT000646/2018-L5

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-24
    Type: Initial release