8P4I | pdb_00008p4i

Cyanide dihydratase from Bacillus pumilus C1

PDB DOI: https://doi.org/10.2210/pdb8P4I/pdb
EM Map EMD-17409: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Bacillus pumilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-05-22 Released: 2023-08-16
Deposition Author(s): Mulelu, A.E., Reitz, J., van Rooyen, J.M., Scheffer, M., Frangakis, A.S., Dlamini, L.S., Woodward, J.D., Benedik, M.J., Sewell, B.T.
Funding Organization(s): National Research Foundation in South Africa

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

The Role of Histidine Residues in the Oligomerization of Cyanide Dihydratase from Bacillus pumilus C1

Mulelu, A.E., Reitz, J., van Rooyen, J., Scheffer, M., Frangakis, A.S., Dlamini, L.S., Woodward, J.D., Benedik, M.J., Sewell, B.T.

To be published.

Macromolecule Content

Total Structure Weight: 611 kDa
Atom Count: 42,976
Modeled Residue Count: 5,389
Deposited Residue Count: 5,389
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cyanide dihydratase	A [auth B] B [auth D] C [auth F] D [auth G] E [auth H] A [auth B], B [auth D], C [auth F], D [auth G], E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], J [auth M], K [auth N], L [auth O], M [auth P], N [auth Q], O [auth R], P [auth S], Q [auth U]	317	Bacillus pumilus	Mutation(s): 0 Gene Names: cynD
UniProt
Find proteins for Q8GGL4 (Bacillus pumilus) Explore Q8GGL4 Go to UniProtKB: Q8GGL4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8GGL4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.83 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20
MODEL REFINEMENT	UCSF ChimeraX	1.4
MODEL REFINEMENT	Coot	0.98.1

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-08-16

Deposition Author(s):

van Rooyen, J.M.

Frangakis, A.S.

Funding Organization	Location	Grant Number
National Research Foundation in South Africa	South Africa	--

Revision History (Full details and data files)

Version 1.0: 2023-08-16
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.