8R4G

Plastidial phosphorylase Pho1 from Solanum tuberosum in complex with a-D-glucose

PDB DOI: https://doi.org/10.2210/pdb8R4G/pdb

Classification: TRANSFERASE
Organism(s): Solanum tuberosum
Mutation(s): No

Deposited: 2023-11-13 Released: 2024-10-09
Deposition Author(s): Koulas, S.M., Leonidas, D.D.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.286
R-Value Work: 0.235
R-Value Observed: 0.238

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Kinetic and Structural Studies of the Plastidial Solanum tuberosum Phosphorylase

Koulas, S.M., Kyriakis, E., Tsagkarakou, A.S., Leonidas, D.D.

(2024) ACS Omega

DOI: https://doi.org/10.1021/acsomega.4c06313

Macromolecule Content

Total Structure Weight: 313.39 kDa
Atom Count: 20,212
Modelled Residue Count: 2,490
Deposited Residue Count: 2,748
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic	A, B, C	916	Solanum tuberosum	Mutation(s): 0 EC: 2.4.1.1
UniProt
Find proteins for P04045 (Solanum tuberosum) Explore P04045 Go to UniProtKB: P04045
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P04045
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GLC (Subject of Investigation/LOI) Query on GLC Download Ideal Coordinates CCD File SDF format, chain H [auth B] SDF format, chain K [auth C] SDF format, chain D [auth A] MOL2 format, chain H [auth B] MOL2 format, chain K [auth C] MOL2 format, chain D [auth A] mmCIF format, chain H [auth B] mmCIF format, chain K [auth C] mmCIF format, chain D [auth A]	D [auth A], H [auth B], K [auth C]	alpha-D-glucopyranose C₆ H₁₂ O₆ WQZGKKKJIJFFOK-DVKNGEFBSA-N		Interactions Focus chain D [auth A] Focus chain H [auth B] Focus chain K [auth C]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain I [auth B] SDF format, chain J [auth B] SDF format, chain L [auth C] SDF format, chain M [auth C] SDF format, chain N [auth C] SDF format, chain O [auth C] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain I [auth B] MOL2 format, chain J [auth B] MOL2 format, chain L [auth C] MOL2 format, chain M [auth C] MOL2 format, chain N [auth C] MOL2 format, chain O [auth C] mmCIF format, chain E [auth A] mmCIF format, chain F [auth A] mmCIF format, chain G [auth A] mmCIF format, chain I [auth B] mmCIF format, chain J [auth B] mmCIF format, chain L [auth C] mmCIF format, chain M [auth C] mmCIF format, chain N [auth C] mmCIF format, chain O [auth C]	E [auth A] F [auth A] G [auth A] I [auth B] J [auth B] E [auth A], F [auth A], G [auth A], I [auth B], J [auth B], L [auth C], M [auth C], N [auth C], O [auth C]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain I [auth B] Focus chain J [auth B] Focus chain L [auth C] Focus chain M [auth C] Focus chain N [auth C] Focus chain O [auth C]