8RKZ | pdb_00008rkz

Crystal structure of a cysteine hydrolase from Phytophthora infestans

PDB DOI: https://doi.org/10.2210/pdb8RKZ/pdb

Classification: HYDROLASE
Organism(s): Phytophthora infestans
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-01-02 Released: 2025-01-15
Deposition Author(s): Altegoer, F., Weiland, P., Bange, G.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.235 (Depositor), 0.234 (DCC)
R-Value Work:
0.191 (Depositor), 0.191 (DCC)
R-Value Observed:
0.193 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Structural and functional characterization of an isochorismate (ISC)-like protein in a plant-pathogenic fungus

Rubio Elizalde, I., Christ, M., Weiland, P., Jalomo, E., Voll, L., Altegoer, F., Bange, G.

To be published.

Macromolecule Content

Total Structure Weight: 367.75 kDa
Atom Count: 25,784
Modeled Residue Count: 3,169
Deposited Residue Count: 3,344
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Isochorismatase family	A [auth G] B [auth H] C [auth L] D [auth M] E [auth D] A [auth G], B [auth H], C [auth L], D [auth M], E [auth D], F [auth J], G [auth I], H [auth K], I [auth A], J [auth P], K [auth O], L [auth N], M [auth B], N [auth C], O [auth F], P [auth E]	209	Phytophthora infestans	Mutation(s): 0 Gene Names: GN244_ATG15348, GN958_ATG18013
UniProt
Find proteins for D0P3W1 (Phytophthora infestans (strain T30-4)) Explore D0P3W1 Go to UniProtKB: D0P3W1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D0P3W1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.235 (Depositor), 0.234 (DCC)
R-Value Work: 0.191 (Depositor), 0.191 (DCC)
R-Value Observed: 0.193 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.34	α = 90
b = 218.35	β = 102.41
c = 101.59	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-01-15

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded	Germany	--

Revision History (Full details and data files)

Version 1.0: 2025-01-15
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.