8RL2

Human pre-60S - State 5

PDB DOI: https://doi.org/10.2210/pdb8RL2/pdb
EM Map EMD-19330: EMDB EMDataResource
NAKB: 8RL2

Classification: RIBOSOME
Organism(s): Homo sapiens
Mutation(s): Yes

Deposited: 2024-01-02 Released: 2025-01-15
Deposition Author(s): Thoms, M., Denk, T., Beckmann, R.
Funding Organization(s): European Research Council (ERC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Human pre-60S - State 5

Thoms, M., Hurt, E., Beckmann, R.

To be published.

Macromolecule Content

Total Structure Weight: 2,971.29 kDa
Atom Count: 149,669
Modelled Residue Count: 12,564
Deposited Residue Count: 16,176
Unique protein chains: 49
Unique nucleic acid chains: 3

Macromolecules

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8	D [auth LA]	257	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62917 (Homo sapiens) Explore P62917 Go to UniProtKB: P62917
GTEx: ENSG00000161016
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62917
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L3	E [auth LB]	403	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P39023 (Homo sapiens) Explore P39023 Go to UniProtKB: P39023
PHAROS: P39023 GTEx: ENSG00000100316
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P39023
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L4	F [auth LC]	427	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P36578 (Homo sapiens) Explore P36578 Go to UniProtKB: P36578
PHAROS: P36578 GTEx: ENSG00000174444
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P36578
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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L5	G [auth LD]	297	Homo sapiens	Mutation(s): 0
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Find proteins for P46777 (Homo sapiens) Explore P46777 Go to UniProtKB: P46777
PHAROS: P46777 GTEx: ENSG00000122406
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P46777
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L6	H [auth LE]	288	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q02878 (Homo sapiens) Explore Q02878 Go to UniProtKB: Q02878
PHAROS: Q02878 GTEx: ENSG00000089009
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q02878
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7	I [auth LF]	248	Homo sapiens	Mutation(s): 0
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Find proteins for P18124 (Homo sapiens) Explore P18124 Go to UniProtKB: P18124
PHAROS: P18124 GTEx: ENSG00000147604
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P18124
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7a	J [auth LG]	266	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62424 (Homo sapiens) Explore P62424 Go to UniProtKB: P62424
PHAROS: P62424 GTEx: ENSG00000148303
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62424
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L9	K [auth LH]	192	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P32969 (Homo sapiens) Explore P32969 Go to UniProtKB: P32969
PHAROS: P32969 GTEx: ENSG00000163682
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P32969
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11	L [auth LJ]	178	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62913 (Homo sapiens) Explore P62913 Go to UniProtKB: P62913
PHAROS: P62913 GTEx: ENSG00000142676
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62913
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13	M [auth LL]	211	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P26373 (Homo sapiens) Explore P26373 Go to UniProtKB: P26373
PHAROS: P26373 GTEx: ENSG00000167526
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P26373
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L14	N [auth LM]	215	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P50914 (Homo sapiens) Explore P50914 Go to UniProtKB: P50914
PHAROS: P50914 GTEx: ENSG00000188846
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P50914
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L15	O [auth LN]	204	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61313 (Homo sapiens) Explore P61313 Go to UniProtKB: P61313
PHAROS: P61313 GTEx: ENSG00000174748
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P61313
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13a	P [auth LO]	203	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P40429 (Homo sapiens) Explore P40429 Go to UniProtKB: P40429
PHAROS: P40429 GTEx: ENSG00000142541
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P40429
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L17	Q [auth LP]	184	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18621 (Homo sapiens) Explore P18621 Go to UniProtKB: P18621
PHAROS: P18621 GTEx: ENSG00000265681
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P18621
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18	R [auth LQ]	188	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q07020 (Homo sapiens) Explore Q07020 Go to UniProtKB: Q07020
PHAROS: Q07020 GTEx: ENSG00000063177
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q07020
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L19	S [auth LR]	196	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P84098 (Homo sapiens) Explore P84098 Go to UniProtKB: P84098
PHAROS: P84098 GTEx: ENSG00000108298
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P84098
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18a	T [auth LS]	176	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q02543 (Homo sapiens) Explore Q02543 Go to UniProtKB: Q02543
GTEx: ENSG00000105640
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q02543
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L21	U [auth LT]	160	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46778 (Homo sapiens) Explore P46778 Go to UniProtKB: P46778
PHAROS: P46778 GTEx: ENSG00000122026
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P46778
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L22	V [auth LU]	128	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P35268 (Homo sapiens) Explore P35268 Go to UniProtKB: P35268
PHAROS: P35268 GTEx: ENSG00000116251
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P35268
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23	W [auth LV]	140	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62829 (Homo sapiens) Explore P62829 Go to UniProtKB: P62829
PHAROS: P62829 GTEx: ENSG00000125691
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62829
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23a	X [auth LX]	156	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62750 (Homo sapiens) Explore P62750 Go to UniProtKB: P62750
PHAROS: P62750 GTEx: ENSG00000198242
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62750
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L26	Y [auth LY]	145	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61254 (Homo sapiens) Explore P61254 Go to UniProtKB: P61254
PHAROS: P61254 GTEx: ENSG00000161970
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P61254
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27	Z [auth LZ]	136	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61353 (Homo sapiens) Explore P61353 Go to UniProtKB: P61353
PHAROS: P61353 GTEx: ENSG00000131469
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P61353
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27a	AA [auth La]	148	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46776 (Homo sapiens) Explore P46776 Go to UniProtKB: P46776
PHAROS: P46776 GTEx: ENSG00000166441
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P46776
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L30	BA [auth Lc]	115	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62888 (Homo sapiens) Explore P62888 Go to UniProtKB: P62888
PHAROS: P62888 GTEx: ENSG00000156482
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62888
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L31	CA [auth Ld]	125	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62899 (Homo sapiens) Explore P62899 Go to UniProtKB: P62899
PHAROS: P62899 GTEx: ENSG00000071082
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62899
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L32	DA [auth Le]	135	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62910 (Homo sapiens) Explore P62910 Go to UniProtKB: P62910
PHAROS: P62910 GTEx: ENSG00000144713
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62910
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35a	EA [auth Lf]	110	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18077 (Homo sapiens) Explore P18077 Go to UniProtKB: P18077
PHAROS: P18077 GTEx: ENSG00000182899
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P18077
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L34	FA [auth Lg]	117	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P49207 (Homo sapiens) Explore P49207 Go to UniProtKB: P49207
PHAROS: P49207 GTEx: ENSG00000109475
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P49207
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35	GA [auth Lh]	123	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P42766 (Homo sapiens) Explore P42766 Go to UniProtKB: P42766
PHAROS: P42766 GTEx: ENSG00000136942
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P42766
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36	HA [auth Li]	105	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3U8 (Homo sapiens) Explore Q9Y3U8 Go to UniProtKB: Q9Y3U8
PHAROS: Q9Y3U8 GTEx: ENSG00000130255
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Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9Y3U8
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37	IA [auth Lj]	97	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61927 (Homo sapiens) Explore P61927 Go to UniProtKB: P61927
PHAROS: P61927 GTEx: ENSG00000145592
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Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P61927
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Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L38	JA [auth Lk]	70	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63173 (Homo sapiens) Explore P63173 Go to UniProtKB: P63173
PHAROS: P63173 GTEx: ENSG00000172809
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Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P63173
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Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L39	KA [auth Ll]	51	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62891 (Homo sapiens) Explore P62891 Go to UniProtKB: P62891
GTEx: ENSG00000198918
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62891
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Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37a	LA [auth Lp]	92	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61513 (Homo sapiens) Explore P61513 Go to UniProtKB: P61513
PHAROS: P61513 GTEx: ENSG00000197756
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P61513
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Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L28	MA [auth Lr]	137	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46779 (Homo sapiens) Explore P46779 Go to UniProtKB: P46779
PHAROS: P46779 GTEx: ENSG00000108107
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P46779
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL11	NA [auth Lt]	165	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P30050 (Homo sapiens) Explore P30050 Go to UniProtKB: P30050
PHAROS: P30050 GTEx: ENSG00000197958
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P30050
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
Eukaryotic translation initiation factor 6	OA [auth CA]	245	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P56537 (Homo sapiens) Explore P56537 Go to UniProtKB: P56537
PHAROS: P56537 GTEx: ENSG00000242372
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P56537
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleolar GTP-binding protein 2	PA [auth CB]	731	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q13823 (Homo sapiens) Explore Q13823 Go to UniProtKB: Q13823
PHAROS: Q13823 GTEx: ENSG00000134697
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q13823
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein-like 3	QA [auth CC]	549	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BVP2 (Homo sapiens) Explore Q9BVP2 Go to UniProtKB: Q9BVP2
PHAROS: Q9BVP2 GTEx: ENSG00000163938
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Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9BVP2
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
GTP-binding protein 4	RA [auth CD]	634	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BZE4 (Homo sapiens) Explore Q9BZE4 Go to UniProtKB: Q9BZE4
PHAROS: Q9BZE4 GTEx: ENSG00000107937
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Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9BZE4
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Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein LLP homolog	SA [auth CE]	129	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BRT6 (Homo sapiens) Explore Q9BRT6 Go to UniProtKB: Q9BRT6
PHAROS: Q9BRT6 GTEx: ENSG00000139233
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Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9BRT6
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Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
mRNA turnover protein 4 homolog	TA [auth CF]	239	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UKD2 (Homo sapiens) Explore Q9UKD2 Go to UniProtKB: Q9UKD2
PHAROS: Q9UKD2 GTEx: ENSG00000053372
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9UKD2
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Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
Notchless protein homolog 1	UA [auth CG]	485	Homo sapiens	Mutation(s): 1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NVX2 (Homo sapiens) Explore Q9NVX2 Go to UniProtKB: Q9NVX2
PHAROS: Q9NVX2 GTEx: ENSG00000073536
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UniProt Group	Q9NVX2
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Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome biogenesis protein NSA2 homolog	VA [auth CH]	260	Homo sapiens	Mutation(s): 0
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Find proteins for O95478 (Homo sapiens) Explore O95478 Go to UniProtKB: O95478
PHAROS: O95478 GTEx: ENSG00000164346
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UniProt Group	O95478
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Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable ribosome biogenesis protein RLP24	WA [auth CI]	163	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UHA3 (Homo sapiens) Explore Q9UHA3 Go to UniProtKB: Q9UHA3
PHAROS: Q9UHA3 GTEx: ENSG00000137876
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Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9UHA3
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Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome production factor 2 homolog	XA [auth CJ]	306	Homo sapiens	Mutation(s): 0
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Find proteins for Q9H7B2 (Homo sapiens) Explore Q9H7B2 Go to UniProtKB: Q9H7B2
PHAROS: Q9H7B2 GTEx: ENSG00000197498
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Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9H7B2
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Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome biogenesis regulatory protein homolog	YA [auth CK]	365	Homo sapiens	Mutation(s): 0
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Find proteins for Q15050 (Homo sapiens) Explore Q15050 Go to UniProtKB: Q15050
PHAROS: Q15050 GTEx: ENSG00000179041
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UniProt Group	Q15050
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Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc finger protein 593	ZA [auth CL]	134	Homo sapiens	Mutation(s): 0
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Find proteins for O00488 (Homo sapiens) Explore O00488 Go to UniProtKB: O00488
PHAROS: O00488 GTEx: ENSG00000142684
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O00488
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Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GTP Query on GTP Download Ideal Coordinates CCD File SDF format, chain DB [auth CB] MOL2 format, chain DB [auth CB] mmCIF format, chain DB [auth CB]	DB [auth CB]	GUANOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₄ P₃ XKMLYUALXHKNFT-UUOKFMHZSA-N		Interactions Focus chain DB [auth CB] Interactions & Density Focus chain DB [auth CB]
GDP Query on GDP Download Ideal Coordinates CCD File SDF format, chain FB [auth CD] MOL2 format, chain FB [auth CD] mmCIF format, chain FB [auth CD]	FB [auth CD]	GUANOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₁ P₂ QGWNDRXFNXRZMB-UUOKFMHZSA-N		Interactions Focus chain FB [auth CD] Interactions & Density Focus chain FB [auth CD]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain AB [auth Lg] SDF format, chain BB [auth Lj] SDF format, chain CB [auth Lp] SDF format, chain HB [auth CI] SDF format, chain IB [auth CL] MOL2 format, chain AB [auth Lg] MOL2 format, chain BB [auth Lj] MOL2 format, chain CB [auth Lp] MOL2 format, chain HB [auth CI] MOL2 format, chain IB [auth CL] mmCIF format, chain AB [auth Lg] mmCIF format, chain BB [auth Lj] mmCIF format, chain CB [auth Lp] mmCIF format, chain HB [auth CI] mmCIF format, chain IB [auth CL]	AB [auth Lg], BB [auth Lj], CB [auth Lp], HB [auth CI], IB [auth CL]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain AB [auth Lg] Focus chain BB [auth Lj] Focus chain CB [auth Lp] Focus chain HB [auth CI] Focus chain IB [auth CL] Interactions & Density Focus chain AB [auth Lg] Focus chain BB [auth Lj] Focus chain CB [auth Lp] Focus chain HB [auth CI] Focus chain IB [auth CL]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain GB [auth CD] SDF format, chain EB [auth CB] MOL2 format, chain GB [auth CD] MOL2 format, chain EB [auth CB] mmCIF format, chain GB [auth CD] mmCIF format, chain EB [auth CB]	EB [auth CB], GB [auth CD]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain EB [auth CB] Focus chain GB [auth CD] Interactions & Density Focus chain EB [auth CB] Focus chain GB [auth CD]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-01-15

Deposition Author(s):

Thoms, M.

Denk, T.

Beckmann, R.

Funding Organization	Location	Grant Number
European Research Council (ERC)	European Union	--

Revision History (Full details and data files)

Version 1.0: 2025-01-15
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Entity ID: 1
Molecule	Chains	Length	Organism	Image
28S rRNA	A [auth L5]	5,070	Homo sapiens
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Reference Sequence LOADING

Prepare Data

Validate Data

Deposit Data

Help and Resources

8RL2

Human pre-60S - State 5

Human pre-60S - State 5

Entity ID: 4

UniProt & NIH Common Fund Data Resources

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Entity ID: 21

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Entity ID: 22