8SR4

particulate methane monooxygeanse treated with potassium cyanide and copper reloaded

  • Classification: OXIDOREDUCTASE
  • Organism(s): Methylococcus capsulatus str. Bath
  • Mutation(s): No 
  • Membrane Protein: Yes  MemProtMD

  • Deposited: 2023-05-05 Released: 2023-11-15 
  • Deposition Author(s): Tucci, F.J., Jodts, R.J., Rosenzweig, A.C.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS), National Science Foundation (NSF, United States)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.12 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Product analogue binding identifies the copper active site of particulate methane monooyxgenase

Tucci, F.J., Jodts, R.J., Hoffman, B.M., Rosenzweig, A.C.

(2023) Nat Catal 


Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Particulate methane monooxygenase alpha subunitA,
D [auth E],
E [auth I]		382Methylococcus capsulatus str. BathMutation(s): 0 
Gene Names: pmoB1, pmoB, MCA1796, pmoB2, MCA2853
EC: 1.14.18.3
Membrane Entity: Yes 
UniProt
Find proteins for G1UBD1 (Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath))
Explore G1UBD1 
Go to UniProtKB:  G1UBD1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1UBD1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Particulate methane monooxygenase beta subunitB,
F,
G [auth J]		247Methylococcus capsulatus str. BathMutation(s): 0 
Gene Names: pmoA1, pmoA, MCA1797, pmoA2, MCA2854
EC: 1.14.18.3
Membrane Entity: Yes 
UniProt
Find proteins for Q607G3 (Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath))
Explore Q607G3 
Go to UniProtKB:  Q607G3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ607G3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Ammonia monooxygenase/methane monooxygenase, subunit C family proteinC,
H [auth G],
I [auth K]		236Methylococcus capsulatus str. BathMutation(s): 0 
Gene Names: pmoC1, MCA1798, MCA2855
EC: 1.14.13.25
Membrane Entity: Yes 
UniProt
Find proteins for Q603F1 (Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath))
Explore Q603F1 
Go to UniProtKB:  Q603F1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ603F1
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.12 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19.2_4158:

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM118035
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM111097
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesT32GM105538
National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)United StatesF31ES034283
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesT32GM008382
National Science Foundation (NSF, United States)United StatesMCB-1908587

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-15
    Type: Initial release