RCSB PDB - 8W2E: SARS-CoV-2 M protein dimer in complex with JNJ-9676 and Fab-B

 8W2E

SARS-CoV-2 M protein dimer in complex with JNJ-9676 and Fab-B


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.06 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

SARS-CoV-2 M protein dimer in complex with JNJ-9676 and Fab-B

Yin, Y.Van Damme, E.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Membrane protein
A, B
270SARS-CoV-2 pseudovirusMutation(s): 0 
UniProt
Find proteins for P0DTC5 (Severe acute respiratory syndrome coronavirus 2)
Explore P0DTC5 
Go to UniProtKB:  P0DTC5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DTC5
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Fab B Heavy Chain
C, E
220Homo sapiensMutation(s): 0 
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Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Fab B Light Chain
D, F
225Homo sapiensMutation(s): 0 
Entity Groups  
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Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1AE8 (Subject of Investigation/LOI)
Query on A1AE8

Download Ideal Coordinates CCD File 
G [auth A],
H [auth B]
(6S,8R)-N-(3-cyanophenyl)-5-{4-[difluoro(phenyl)methyl]phenyl}-6-methyl-4-oxo-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrazine-3-carboxamide
C28 H21 F2 N5 O2
XXXBMVUCPXBZMT-SFHVURJKSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.06 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other government0000-0003-1808-9851

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-29
    Type: Initial release