8WOJ | pdb_00008woj

Structure of RxLR121 effector from phytophthora capsici

PDB DOI: https://doi.org/10.2210/pdb8WOJ/pdb

Classification: IMMUNOSUPPRESSANT
Organism(s): Phytophthora capsici LT1534
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-10-07 Released: 2023-12-06
Deposition Author(s): Yang, C.C., Zhang, X.G.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.77 Å
R-Value Free:
0.236 (Depositor), 0.234 (DCC)
R-Value Work:
0.200 (Depositor), 0.202 (DCC)
R-Value Observed:
0.204 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 8WOJ

This is version 1.1 of the entry. See complete history.

Literature

Structure of RxLR121 effector from phytophthora capsici

Yang, C.C., Zhang, X.G.

To be published.

Macromolecule Content

Total Structure Weight: 18.82 kDa
Atom Count: 1,449
Modeled Residue Count: 151
Deposited Residue Count: 152
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RxLR121 effector	A, B	76	Phytophthora capsici LT1534	Mutation(s): 0
UniProt
Find proteins for A0AAJ6N6K8 (Phytophthora capsici LT1534) Explore A0AAJ6N6K8 Go to UniProtKB: A0AAJ6N6K8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0AAJ6N6K8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.77 Å
R-Value Free: 0.236 (Depositor), 0.234 (DCC)
R-Value Work: 0.200 (Depositor), 0.202 (DCC)
R-Value Observed: 0.204 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.383	α = 90
b = 34.448	β = 89.96
c = 50.388	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
SOLVE	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-12-06

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	CARS-25-03B

Revision History (Full details and data files)

Version 1.0: 2023-12-06
Type: Initial release
Version 1.1: 2024-11-20
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.