8X0U | pdb_00008x0u

Crystal structure of cupin-like fold protein StrC from Stachybotrys sp.g12

PDB DOI: https://doi.org/10.2210/pdb8X0U/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Stachybotrys sp.
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-11-06 Released: 2024-09-11
Deposition Author(s): Wang, H., Wang, W.G.
Funding Organization(s): National Natural Science Foundation of Jiangsu Province, National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free:
0.233 (Depositor), 0.223 (DCC)
R-Value Work:
0.187 (Depositor)
R-Value Observed:
0.189 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Structural and Computational Insights into the Noncanonical Aromatization in Fungal Polyketide Biosynthesis

Wang, H., Peng, C., Chen, X.X., Wang, H.Y., Yang, R., Xiang, H., Hu, Q.F., Liu, L., Chung, L.W., Matsuda, Y., Wang, W.G.

(2024) ACS Catal 14: 10796-10805

DOI: https://doi.org/10.1021/acscatal.4c01043

Macromolecule Content

Total Structure Weight: 274.71 kDa
Atom Count: 17,276
Modeled Residue Count: 2,212
Deposited Residue Count: 2,484
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cupin conserved barrel domain protein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	207	Stachybotrys sp.	Mutation(s): 0
UniProt
Find proteins for A0A084QTE3 (Stachybotrys chlorohalonatus (strain IBT 40285)) Explore A0A084QTE3 Go to UniProtKB: A0A084QTE3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A084QTE3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free: 0.233 (Depositor), 0.223 (DCC)
R-Value Work: 0.187 (Depositor)
R-Value Observed: 0.189 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.7	α = 90
b = 253.977	β = 102.79
c = 73.835	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-09-11

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of Jiangsu Province	China	BK20210434
National Natural Science Foundation of China (NSFC)	China	22377105

Revision History (Full details and data files)

Version 1.0: 2024-09-11
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.