8YN1

Cryo-EM structure of NRG1A(LRR) in complex with EDS1-SAG101-(ADPr-ATP)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.09 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Balanced plant helper NLR activation by a modified host protein complex.

Huang, S.Wang, J.Song, R.Jia, A.Xiao, Y.Sun, Y.Wang, L.Mahr, D.Wu, Z.Han, Z.Li, X.Parker, J.E.Chai, J.

(2025) Nature 

  • DOI: https://doi.org/10.1038/s41586-024-08521-7
  • Primary Citation of Related Structures:  
    8YN0, 8YN1

  • PubMed Abstract: 

    Nucleotide-binding leucine-rich repeat (NLR) receptors play crucial roles in plant immunity by sensing pathogen effectors 1 . In Arabidopsis, certain sensor NLRs function as NADases to catalyse the production of second messengers 2,3 , which can be recognized by enhanced disease susceptibility 1 (EDS1) with its partner senescence-associated gene 101 (SAG101), to activate helper NLR N requirement gene 1 (NRG1) 4 . A cryoelectron microscopy structure shows that second-messenger-activated EDS1-SAG101 mainly contacts the leucine-rich repeat domain of NRG1A to mediate the formation of an induced EDS1-SAG101-NRG1A complex. Structural comparisons show that binding of a second messenger induces conformational changes in EDS1-SAG101, which are recognized by NRG1A, leading to its allosteric activation. We further show that an inhibitory NRG1 family member, NRG1C, efficiently outcompetes NRG1A for binding to second-messenger-activated EDS1-SAG101. These findings uncover mechanisms for NRG1A activation through its recognition of a modified host EDS1-SAG101 complex, and NRG1A inhibition by NRG1C through sequestration of the activated EDS1-SAG101, thus shedding light on the activation and constraint of a central plant immune response system.


  • Organizational Affiliation

    Research Center for Industries of the Future and School of Life Sciences, Westlake University, Hangzhou, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein EDS1614Arabidopsis thalianaMutation(s): 0 
Gene Names: EDS1EDS1-90EDS1AAt3g48090T17F15.40
UniProt
Find proteins for Q9SU72 (Arabidopsis thaliana)
Explore Q9SU72 
Go to UniProtKB:  Q9SU72
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UniProt GroupQ9SU72
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Senescence-associated carboxylesterase 101533Arabidopsis thalianaMutation(s): 0 
Gene Names: SAG101At5g14930F2G14.50
EC: 3.1.1.1
UniProt
Find proteins for Q4F883 (Arabidopsis thaliana)
Explore Q4F883 
Go to UniProtKB:  Q4F883
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UniProt GroupQ4F883
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Probable disease resistance protein At5g66900406Arabidopsis thalianaMutation(s): 0 
Gene Names: At5g66900MUD21.16
UniProt
Find proteins for Q9FKZ1 (Arabidopsis thaliana)
Explore Q9FKZ1 
Go to UniProtKB:  Q9FKZ1
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UniProt GroupQ9FKZ1
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.09 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release
  • Version 1.1: 2025-02-19
    Changes: Data collection, Database references
  • Version 1.2: 2025-02-26
    Changes: Data collection, Database references