Structure and Mechanism of ALV-J Epitope Presented by MHC Class I Molecule BF20201
Jia, Y.S., Li, Y.L., Ma, M.L., Liao, M., Dai, M.M.(2024) Xu Mu Shou Yi Xue Bao 55: 3132-3142
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
MHC class I alpha chain 2 | A, C [auth D], E [auth G], G [auth J] | 273 | Gallus gallus | Mutation(s): 0 Gene Names: B-FIV, BF2 | ![]() |
UniProt | |||||
Find proteins for O46789 (Gallus gallus) Explore O46789 Go to UniProtKB: O46789 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O46789 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | B, D [auth E], F [auth H], H [auth K] | 97 | Gallus gallus | Mutation(s): 0 Gene Names: B2M | ![]() |
UniProt | |||||
Find proteins for P21611 (Gallus gallus) Explore P21611 Go to UniProtKB: P21611 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P21611 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Gag protein | I, J [auth C], K [auth F], L | 9 | Avian leukemia virus | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for G0Z7Q1 (Avian leukosis virus) Explore G0Z7Q1 Go to UniProtKB: G0Z7Q1 | |||||
Entity Groups | |||||
UniProt Group | G0Z7Q1 | ||||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
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a = 86.614 | α = 90 |
b = 115.584 | β = 111.158 |
c = 94.107 | γ = 90 |
Software Name | Purpose |
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DIALS | data reduction |
DIALS | data scaling |
PHASER | phasing |
REFMAC | refinement |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | -- |