8Z0H

Crystal structure of 9-mer peptide from ALV-J in complex with BF2*0201


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 
    0.212 (Depositor), 0.220 (DCC) 
  • R-Value Work: 
    0.182 (Depositor), 0.192 (DCC) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure and Mechanism of ALV-J Epitope Presented by MHC Class I Molecule BF20201

Jia, Y.S.Li, Y.L.Ma, M.L.Liao, M.Dai, M.M.

(2024) Xu Mu Shou Yi Xue Bao 55: 3132-3142


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
MHC class I alpha chain 2A,
C [auth D],
E [auth G],
G [auth J]
273Gallus gallusMutation(s): 0 
Gene Names: B-FIVBF2
UniProt
Find proteins for O46789 (Gallus gallus)
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UniProt GroupO46789
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-2-microglobulinB,
D [auth E],
F [auth H],
H [auth K]
97Gallus gallusMutation(s): 0 
Gene Names: B2M
UniProt
Find proteins for P21611 (Gallus gallus)
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UniProt GroupP21611
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Gag proteinI,
J [auth C],
K [auth F],
L
9Avian leukemia virusMutation(s): 0 
UniProt
Find proteins for G0Z7Q1 (Avian leukosis virus)
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Entity Groups  
UniProt GroupG0Z7Q1
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free:  0.212 (Depositor), 0.220 (DCC) 
  • R-Value Work:  0.182 (Depositor), 0.192 (DCC) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 86.614α = 90
b = 115.584β = 111.158
c = 94.107γ = 90
Software Package:
Software NamePurpose
DIALSdata reduction
DIALSdata scaling
PHASERphasing
REFMACrefinement

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-15
    Type: Initial release
  • Version 1.1: 2025-02-05
    Changes: Database references