8ZN1

Structure of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii at 3.00 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.166 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Structure of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii at 3.00 A resolution

Viswanathan, V.Kumari, A.Singh, A.Kumar, A.Sharma, P.Chopra, S.Sharma, S.Raje, C.I.Singh, T.P.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glyceraldehyde-3-phosphate dehydrogenaseA,
B [auth C],
C [auth B],
D
341Acinetobacter baumanniiMutation(s): 0 
Gene Names: 
EC: 1.2.1
UniProt
Find proteins for A0A059ZTK9 (Acinetobacter baumannii)
Explore A0A059ZTK9 
Go to UniProtKB:  A0A059ZTK9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A059ZTK9
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAD (Subject of Investigation/LOI)
Query on NAD

Download Ideal Coordinates CCD File 
E [auth A],
H [auth C],
K [auth B],
N [auth D]
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
SO4 (Subject of Investigation/LOI)
Query on SO4

Download Ideal Coordinates CCD File 
F [auth A]
G [auth A]
I [auth C]
J [auth C]
L [auth B]
F [auth A],
G [auth A],
I [auth C],
J [auth C],
L [auth B],
M [auth B],
O [auth D],
P [auth D]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.166 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 147.646α = 90
b = 167.88β = 90
c = 152.269γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing
Cootmodel building

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Science and Engineering Research Board (SERB)India--
Indian Council of Medical ResearchIndia--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-05
    Type: Initial release