9IQB

Crystal structure of beta-glucosidase from Acetivibrio thermocellus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.350 
  • R-Value Work: 0.300 

Starting Model: experimental
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Literature

Rational design facilitates the improvement of glucose tolerance and catalytic properties of a beta-glucosidase from Acetivibrio thermocellus.

Kamale, C.Rauniyar, A.Bhaumik, P.

(2025) FEBS J 

  • DOI: https://doi.org/10.1111/febs.17394
  • Primary Citation of Related Structures:  
    9IQB

  • PubMed Abstract: 

    Cellulases are an ensemble of enzymes that hydrolyze cellulose chains into fermentable glucose and hence are widely used in bioethanol production. The last enzyme of the cellulose degradation pathway, β-glucosidase, is inhibited by its product, glucose. The product inhibition by glucose hinders cellulose hydrolysis limiting the saccharification during bioethanol production. Thus, engineered β-glucosidases with enhanced glucose tolerance and catalytic efficiency are essential. This study focuses on the rational engineering of β-glucosidase from Acetivibrio thermocellus (WT-AtGH1). Recombinant WT-AtGH1 exhibited activity on cellobiose and p-nitrophenyl-β-d-glucoside as substrates and retained around 80% of its activity over 48 h at 55 °C, pH 5.5. However, WT-AtGH1 showed low glucose tolerance of 380 mm as compared to the required IC 50 value of > 800 mm for industrial use. Thus, a rational design approach was utilized to enhance the glucose tolerance of this enzyme. We determined the 3 Å resolution crystal structure of WT-AtGH1. The structure-based engineered G168W-AtGH1 and S242W-AtGH1 mutants exhibited improved glucose tolerance of 840 and 612 mm, respectively. Surprisingly, S242L-AtGH1 mutant showed ~ 2.5-fold increase in the catalytic efficiency as compared to WT-AtGH1. A combinatorial effect of improved glucose tolerance, as well as enhanced catalytic efficiency, was observed for the G168W-S242L-AtGH1 mutant. All the mutants with enhanced properties showed considerable stability at industrial operating conditions of 55 °C and pH 5.5. Thus, we present mutants of WT-AtGH1 with improved glucose tolerance and kinetic properties that have the potential to increase the efficiency of saccharification during biofuel production.


  • Organizational Affiliation

    Department of Biosciences and Bioengineering, IIT Bombay, Mumbai, India.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-glucosidase A
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
456Acetivibrio thermocellusMutation(s): 0 
Gene Names: bglACthe_0212
EC: 3.2.1.21
UniProt
Find proteins for P26208 (Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372))
Explore P26208 
Go to UniProtKB:  P26208
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP26208
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.350 
  • R-Value Work: 0.300 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 109.93α = 60.118
b = 158.62β = 88.192
c = 158.91γ = 87.478
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Biotechnology (DBT, India)IndiaBT/PR41982/PBD/26/822/2021

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-15
    Type: Initial release