9JDY

Human URAT1 bound with verinurad

• PDB DOI: https://doi.org/10.2210/pdb9JDY/pdb
• EM Map EMD-61401: EMDB EMDataResource

• Classification: TRANSPORT PROTEIN
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2024-09-01 Released: 2024-10-16 
• Deposition Author(s): Wu, C., Zhang, C., Jin, S., Wang, J.J., Dai, A., Jiang, Y., Yang, D., Xu, H.E.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.23 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Molecular mechanisms of uric acid transport by the native human URAT1 and its inhibition by anti-gout drugs

Wu, C., Zhang, C., Jin, S., Wang, J.J., Dai, A., Xu, J., Zhang, H., Yang, X., He, X., Yuan, Q., Hu, W., Xu, Y., Wang, M., Jiang, Y., Yang, D., Xu, H.E.

(2024) bioRxiv 

• DOI: https://doi.org/10.1101/2024.09.11.612394

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 60.02 kDa 
• Atom Count: 3,312 
• Modelled Residue Count: 435 
• Deposited Residue Count: 553 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Solute carrier family 22 member 12	A	553	Homo sapiens	Mutation(s): 0  Gene Names: SLC22A12, OATL4, URAT1, UNQ6453/PRO34004
UniProt & NIH Common Fund Data Resources
Find proteins for Q96S37 (Homo sapiens) Explore Q96S37  Go to UniProtKB:  Q96S37
PHAROS:  Q96S37 GTEx:  ENSG00000197891

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
A1AIJ (Subject of Investigation/LOI)	B [auth A]	verinurad C20 H16 N2 O2 S YYBOLPLTQDKXPM-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.23 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-10-16 
Deposition Author(s): Wu, C., Zhang, C., Jin, S., Wang, J.J., Dai, A., Jiang, Y., Yang, D., Xu, H.E.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32130022
National Natural Science Foundation of China (NSFC)	China	32301016

Revision History  

• Version 1.0: 2024-10-16
  Type: Initial release
  
• Version 2.0: 2024-10-23
  Type: Coordinate replacement
  Reason: Model completeness
  Changes: Advisory, Atomic model, Data collection, Derived calculations, Refinement description, Structure summary
• Version 2.1: 2024-11-06
  Changes: Data collection