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 9ZY7 | pdb_00009zy7

Ca2+ bound gated state Connexin-50


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 9ZY7

This is version 1.0 of the entry. See complete history. 

Literature

Calcium induced N-terminal gating and pore collapse in connexin-46/50 gap junctions

Flores, J.A., O'Neill, S.E., Jarodsky, J.M., Haddad, B.G., Reichow, S.L.

(2026) Nat Commun 

Macromolecule Content 

  • Total Structure Weight: 696.84 kDa 
  • Atom Count: 19,008 
  • Modeled Residue Count: 2,220 
  • Deposited Residue Count: 5,280 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Gap junction alpha-8 protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
440Ovis ariesMutation(s): 0 
UniProt
Find proteins for P55917 (Ovis aries)
Explore P55917 
Go to UniProtKB:  P55917
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP55917
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MC3

Query on MC3



Download:Ideal Coordinates CCD File
AB [auth C]
AC [auth E]
AD [auth G]
AE [auth I]
AF [auth K]
AB [auth C],
AC [auth E],
AD [auth G],
AE [auth I],
AF [auth K],
BA [auth B],
BB [auth C],
BC [auth E],
BD [auth G],
BE [auth I],
BF [auth K],
CA [auth B],
CC [auth E],
CD [auth G],
CE [auth I],
CF [auth K],
DA [auth B],
DB [auth D],
DC [auth E],
DD [auth G],
DE [auth I],
DF [auth K],
EA [auth B],
EB [auth D],
EC [auth F],
ED [auth G],
EE [auth I],
EF [auth K],
FA [auth B],
FB [auth D],
FC [auth F],
FD [auth G],
FE [auth I],
FF [auth K],
GA [auth B],
GB [auth D],
GC [auth F],
GE [auth I],
GF [auth K],
HA [auth B],
HB [auth D],
HC [auth F],
HD [auth H],
HE [auth I],
HF [auth K],
IA [auth B],
IB [auth D],
IC [auth F],
ID [auth H],
IF [auth K],
JA [auth B],
JB [auth D],
JC [auth F],
JD [auth H],
JE [auth J],
JF [auth K],
KA [auth B],
KB [auth D],
KD [auth H],
KE [auth J],
KF [auth L],
LA [auth B],
LB [auth D],
LC [auth F],
LD [auth H],
LE [auth J],
LF [auth L],
MA [auth B],
MB [auth D],
MC [auth F],
MD [auth H],
ME [auth J],
MF [auth L],
N [auth A],
NA [auth B],
NB [auth D],
NC [auth F],
ND [auth H],
NE [auth J],
NF [auth L],
O [auth A],
OB [auth D],
OC [auth F],
OD [auth H],
OE [auth J],
OF [auth L],
P [auth A],
PA [auth C],
PB [auth D],
PC [auth F],
PD [auth H],
PE [auth J],
PF [auth L],
Q [auth A],
QA [auth C],
QC [auth F],
QD [auth H],
QE [auth J],
R [auth A],
RA [auth C],
RB [auth E],
RC [auth F],
RD [auth H],
RE [auth J],
RF [auth L],
S [auth A],
SA [auth C],
SB [auth E],
SD [auth H],
SE [auth J],
SF [auth L],
T [auth A],
TA [auth C],
TB [auth E],
TC [auth G],
TD [auth H],
TE [auth J],
TF [auth L],
U [auth A],
UA [auth C],
UB [auth E],
UC [auth G],
UE [auth J],
UF [auth L],
V [auth A],
VA [auth C],
VB [auth E],
VC [auth G],
VD [auth I],
VE [auth J],
VF [auth L],
W [auth A],
WA [auth C],
WB [auth E],
WC [auth G],
WD [auth I],
WF [auth L],
X [auth A],
XA [auth C],
XB [auth E],
XC [auth G],
XD [auth I],
XE [auth K],
XF [auth L],
Y [auth A],
YA [auth C],
YB [auth E],
YC [auth G],
YD [auth I],
YE [auth K],
Z [auth A],
ZA [auth C],
ZB [auth E],
ZC [auth G],
ZD [auth I],
ZE [auth K]
1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
C36 H72 N O8 P
CITHEXJVPOWHKC-UUWRZZSWSA-N
CA

Query on CA



Download:Ideal Coordinates CCD File
AA [auth B]
CB [auth D]
GD [auth H]
IE [auth J]
KC [auth F]
AA [auth B],
CB [auth D],
GD [auth H],
IE [auth J],
KC [auth F],
M [auth A],
OA [auth C],
QB [auth E],
QF [auth L],
SC [auth G],
UD [auth I],
WE [auth K]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Eye Institute (NIH/NEI)United StatesR35GM124779
National Institutes of Health/National Eye Institute (NIH/NEI)United StatesF31EY030409

Revision History  (Full details and data files)

  • Version 1.0: 2026-10-07
    Type: Initial release