AF_AFB5YIG9F1

COMPUTED STRUCTURE MODEL OF PROTEIN TRANSLOCASE SUBUNIT SECD

There are no experimental data to verify the accuracy of this computed structure model. See Model Confidence metrics below for all regions of the polypeptide chain.

• AlphaFold DB: AF-B5YIG9-F1
• Released in AlphaFold DB:  2021-12-09
  Last Modified in AlphaFold DB: 2022-09-30
• Organism(s): Thermodesulfovibrio yellowstonii DSM 11347
• UniProtKB: B5YIG9

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Model Confidence 

• pLDDT (global): 87.21
• pLDDT (local):

Model Confidence 

•   Very high (pLDDT > 90)    
•   Confident (70 < pLDDT ≤ 90)    
•   Low (50 < pLDDT ≤ 70)    
•   Very low (pLDDT ≤ 50)    

Computed Structure Models provide per-residue confidence score (pLDDT) between 0 and 100. Some regions below 50 pLDDT may be unstructured in isolation.

Assembly  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Macromolecule Content 

• Total Structure Weight: 59.73 kDa 
• Atom Count: 4,213 
• Modeled Residue Count: 540 
• Deposited Residue Count: 540 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein translocase subunit SecD	A	540	Thermodesulfovibrio yellowstonii DSM 11347	Mutation(s): 0  Gene Names: secD
UniProt
Find proteins for B5YIG9 (Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)) Explore B5YIG9  Go to UniProtKB:  B5YIG9