AF_AFQ5HM85F1

COMPUTED STRUCTURE MODEL OF PYRIMIDINE-NUCLEOSIDE PHOSPHORYLASE

There are no experimental data to verify the accuracy of this computed structure model. See Model Confidence metrics below for all regions of the polypeptide chain

• AlphaFold DB: Q5HM85
• Released in AlphaFold DB:  2021-12-09
  Last Modified in AlphaFold DB: 2025-08-01
• Organism(s): Staphylococcus epidermidis RP62A
• UniProtKB: Q5HM85

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Model Confidence 

• pLDDT (global): 95.46
• pLDDT (local):

Model Confidence 

•   Very high (pLDDT > 90)    
•   Confident (70 < pLDDT ≤ 90)    
•   Low (50 < pLDDT ≤ 70)    
•   Very low (pLDDT ≤ 50)    

Computed Structure Models provide per-residue confidence score (pLDDT) between 0 and 100. Some regions below 50 pLDDT may be unstructured in isolation.

Assembly  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Macromolecule Content 

• Total Structure Weight: 46.33 kDa 
• Atom Count: 3,239 
• Modeled Residue Count: 433 
• Deposited Residue Count: 433 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pyrimidine-nucleoside phosphorylase	A	433	Staphylococcus epidermidis RP62A	Mutation(s): 0  Gene Names: pdp EC: 2.4.2.2
UniProt
Find proteins for Q5HM85 (Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)) Explore Q5HM85  Go to UniProtKB:  Q5HM85