1KV9

Structure at 1.9 A Resolution of a Quinohemoprotein Alcohol Dehydrogenase from Pseudomonas putida HK5

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1kv9a1	All alpha proteins	Cytochrome c	Cytochrome c	Quinoprotein alcohol dehydrogenase, C-terminal domain	Quinoprotein alcohol dehydrogenase, C-terminal domain	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
A	d1kv9a2	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase, N-terminal domain	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Quinoprotein alcohol dehydrogenase, C-terminal domain	8028267	4002854	SCOP2 (2022-06-29)
A	SCOP2 Family	Quinoprotein alcohol dehydrogenase-like	8028268	4002772	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome c	8040646	3000815	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Quinoprotein alcohol dehydrogenase-like	8040647	3001727	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PQQ_2	e1kv9A1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PQQ_2	ECOD (1.6)
A	Cytochrome_CBB3	e1kv9A2	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrome_CBB3	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.140.10.10	Mainly Beta	8 Propeller	Methanol Dehydrogenase	Chain A	CATH (4.3.0)
A	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF13360	PQQ-like domain (PQQ_2)	PQQ-like domain	-	Repeat
A	PF13442	Cytochrome C oxidase, cbb3-type, subunit III (Cytochrome_CBB3)	Cytochrome C oxidase, cbb3-type, subunit III	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	TYPE II QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE	oxidoreductase activity catalytic activity cation binding ion binding binding calcium ion binding metal ion binding small molecule binding oxidoreductase activity, acting on CH-OH group of donors organic cyclic compound binding tetrapyrrole binding heme binding organic acid binding anion binding oxidoreductase activity catalytic activity cation binding ion binding binding calcium ion binding metal ion binding small molecule binding oxidoreductase activity, acting on CH-OH group of donors organic cyclic compound binding tetrapyrrole binding heme binding organic acid binding anion binding carboxylic acid binding heterocyclic compound binding pyrroloquinoline quinone binding electron transfer activity	-	cellular anatomical structure membrane outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR018391	Pyrrolo-quinoline quinone beta-propeller repeat	Repeat
A	IPR001479	Quinoprotein dehydrogenase, conserved site	Conserved Site
A	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
A	IPR017512	PQQ-dependent dehydrogenase, methanol/ethanol family	Family
A	IPR009056	Cytochrome c-like domain	Domain
A	IPR002372	Pyrrolo-quinoline quinone repeat	Repeat
A	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM				Cytochrome c

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.