1WB0
specificity and affinity of natural product cyclopentapeptide inhibitor Argifin against human chitinase
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1wb0a1 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | (Trans)glycosidases | Type II chitinase | Chitotriosidase | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d1wb0a2 | Alpha and beta proteins (a+b) | FKBP-like | Chitinase insertion domain | Chitinase insertion domain | Chitotriosidase | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Type II chitinase | 8020640 | 4003194 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Chitinase insertion domain | 8020641 | 4001072 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | (Trans)glycosidases | 8033020 | 3000313 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Chitinase insertion domain | 8033021 | 3000666 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GH18_chitolectin_chitotriosidase | e1wb0A1 | A: a+b two layers | X: FKBP-like | H: Chitinase insertion domain (From Topology) | T: Chitinase insertion domain | F: GH18_chitolectin_chitotriosidase | ECOD (1.6) |
A | Glyco_hydro_18 | e1wb0A2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_18 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
A | 3.10.50.10 | Alpha Beta | Roll | Chitinase A | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00704 | Glycosyl hydrolases family 18 (Glyco_hydro_18) | Glycosyl hydrolases family 18 | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036508 | Chitin binding domain superfamily | Homologous Superfamily | |
IPR029070 | Chitinase insertion domain superfamily | Homologous Superfamily | |
IPR001579 | Glycosyl hydrolase family 18, active site | Active Site | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR050314 | Glycosyl Hydrolase Family 18 | Family | |
IPR001223 | Glycoside hydrolase family 18, catalytic domain | Domain | |
IPR011583 | Chitinase II/V-like, catalytic domain | Domain | |
IPR002557 | Chitin binding domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
DAL | AA0111 , AA0191 :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 | :  |
IAS | AA0111 , AA0191 | :  |
MEA | Parent Component: PHE :  AA0111 , AA0191 , AA0065 :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , N-methyl-L-phenylalanine MOD:00074 | |
VR0 | Parent Component: ARG :  AA0111 , AA0191 , AA0065 |