6FBT | pdb_00006fbt

The X-ray Structure of Lytic Transglycosylase Slt from Pseudomonas aeruginosa in complex with the reaction product NAG-anhNAMpentapeptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e6fbtA1	A: RING/U-box-like	X: Rubredoxin-related	H: Rubredoxin-related	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.1240.20	Mainly Alpha	Orthogonal Bundle	Methyltransferase, Methionine Synthase (B12-binding Domains)	Chain A, domain 1	CATH (utative)
A	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF14718	Soluble lytic murein transglycosylase L domain (SLT_L)	Soluble lytic murein transglycosylase L domain	-	Repeat
A	PF01464	Transglycosylase SLT domain (SLT)	Transglycosylase SLT domain	This family is distantly related to Pfam:PF00062. Members are found in phages, type II, type III and type IV secretion systems (reviewed in [4]).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth E]	NAG-anhNAMpentapeptide	-	-	-
A	Probable soluble lytic transglycosylase	hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	-	cellular anatomical structure periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR037061	Lytic transglycosylase, superhelical linker domain superfamily	Homologous Superfamily
A	IPR008939	Lytic transglycosylase, superhelical U-shaped	Homologous Superfamily
A	IPR012289	Lytic transglycosylase, superhelical linker	Domain
A	IPR023346	Lysozyme-like domain superfamily	Homologous Superfamily
A	IPR008258	Transglycosylase SLT domain 1	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth E]	API	Parent Component: LYS
B [auth E]	DAL	RESID: AA0111 , AA0191 PSI-MOD : meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862
B [auth E]	DGL	RESID: AA0111 , AA0191

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.