6Y67 | pdb_00006y67

Structure of apo Finch Polyomavirus VP1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth AAA]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
AA [auth aaa]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
BA [auth bbb]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
C [auth CCC]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
CA [auth ccc]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
D [auth DDD]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
DA [auth ddd]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
E [auth EEE]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
F [auth FFF]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
G [auth GGG]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
H [auth HHH]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
I [auth III]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
J [auth JJJ]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
K [auth KKK]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
L [auth LLL]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
M [auth MMM]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
N [auth NNN]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
P [auth PPP]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
Q [auth QQQ]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
R [auth RRR]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
S [auth SSS]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
T [auth TTT]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
U [auth UUU]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
V [auth VVV]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
Y [auth YYY]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
Z [auth ZZZ]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
X [auth XXX]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
W [auth WWW]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
O [auth OOO]	SCOP2 Family	papovaviridae-like vp	8100787	4003485	SCOP2 (2022-06-29)
O [auth OOO]	SCOP2 Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2 (2022-06-29)
B [auth BBB]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth AAA]	e6y67AAA1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
AA [auth aaa]	e6y67aaa1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
BA [auth bbb]	e6y67bbb1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
C [auth CCC]	e6y67CCC1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
CA [auth ccc]	e6y67ccc1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
D [auth DDD]	e6y67DDD1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
DA [auth ddd]	e6y67ddd1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
E [auth EEE]	e6y67EEE1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
F [auth FFF]	e6y67FFF1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
G [auth GGG]	e6y67GGG1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
H [auth HHH]	e6y67HHH1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
I [auth III]	e6y67III1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
J [auth JJJ]	e6y67JJJ1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
K [auth KKK]	e6y67KKK1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
L [auth LLL]	e6y67LLL1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
M [auth MMM]	e6y67MMM1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
N [auth NNN]	e6y67NNN1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
P [auth PPP]	e6y67PPP1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
Q [auth QQQ]	e6y67QQQ1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
R [auth RRR]	e6y67RRR1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
S [auth SSS]	e6y67SSS1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
T [auth TTT]	e6y67TTT1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
U [auth UUU]	e6y67UUU1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
V [auth VVV]	e6y67VVV1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
Y [auth YYY]	e6y67YYY1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
Z [auth ZZZ]	e6y67ZZZ1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
X [auth XXX]	e6y67XXX1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
W [auth WWW]	e6y67WWW1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
O [auth OOO]	e6y67OOO1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)
B [auth BBB]	e6y67BBB1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Bac_rhodopsin	F:	ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], CA [auth ccc], D [auth DDD], DA [auth ddd], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX], Y [auth YYY], Z [auth ZZZ]	Capsid protein VP1	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host endocytosis involved in viral entry into host cell	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], CA [auth ccc], D [auth DDD], DA [auth ddd], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX], Y [auth YYY], Z [auth ZZZ]	IPR011222	Double-stranded DNA virus, group I, capsid	Homologous Superfamily
A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], CA [auth ccc], D [auth DDD], DA [auth ddd], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX], Y [auth YYY], Z [auth ZZZ]	IPR000662	Capsid protein VP1,Polyomavirus	Family
A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], CA [auth ccc], D [auth DDD], DA [auth ddd], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX], Y [auth YYY], Z [auth ZZZ]	IPR036931	Polyomavirus capsid protein VP1 superfamily	Homologous Superfamily