7AOR

mt-SSU from Trypanosoma cruzi in complex with mt-IF-3.

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
VA [auth b]F_UNCLASSIFIEDe7aorb1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: F_UNCLASSIFIEDECOD (1.6)
M [auth aj]F_UNCLASSIFIEDe7aoraj1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
YA [auth bc]F_UNCLASSIFIEDe7aorbc1 A: a+b two layersX: IF3-likeH: Translation initiation factor IF3, C-terminal domain (From Topology)T: Translation initiation factor IF3, C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth au]PF00581Rhodanese-like domain (Rhodanese)Rhodanese-like domainRhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.Domain
BA [auth at]PF14311Probable Zinc-ribbon domain (DUF4379)Probable Zinc-ribbon domain- Family
IA [auth z]PF16113Enoyl-CoA hydratase/isomerase (ECH_2)Enoyl-CoA hydratase/isomeraseThis family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from Pfam:PF00378 in the structure of it's ...This family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from Pfam:PF00378 in the structure of it's C-terminus.
Domain
X [auth c]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
Y [auth d]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
CA [auth ar]PF10469AKAP7 2'5' RNA ligase-like domain (AKAP7_NLS)AKAP7 2'5' RNA ligase-like domainAKAP7_NLS is the N-terminal domain of the cyclic AMP-dependent protein kinase A, PKA, anchor protein AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes [1]. AKAP7_NLS carries t ...AKAP7_NLS is the N-terminal domain of the cyclic AMP-dependent protein kinase A, PKA, anchor protein AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes [1]. AKAP7_NLS carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein [2]. Binding to the regulatory subunits RI and RII of PKA is mediated via the family AKAP7_RIRII_bdg. at the C-terminus. This family represents a region that contains two 2'5' RNA ligase like domains Pfam:PF02834. Presumably this domain carried out some as yet unknown enzymatic function.
Domain
C [auth r]PF10236Mitochondrial ribosomal death-associated protein 3 (DAP3)Mitochondrial ribosomal death-associated protein 3- Family
JA [auth y]PF02777Iron/manganese superoxide dismutases, C-terminal domain (Sod_Fe_C)Iron/manganese superoxide dismutases, C-terminal domainsuperoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplas ...superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Domain
KA [auth x]PF02777Iron/manganese superoxide dismutases, C-terminal domain (Sod_Fe_C)Iron/manganese superoxide dismutases, C-terminal domainsuperoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplas ...superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Domain
XA [auth a]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
AB [auth k]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
BB [auth be]PF17487Ribosomal protein S12 (Ribosomal_S12)Ribosomal protein S12- Family
F [auth e]PF01476LysM domain (LysM)LysM domainThe LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation [1]. This domain may have a general peptidoglycan binding function. The structure of this domain is known [2].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth u]mS35- - -
D [auth n]uS19- - -
K [auth au]Rhodanese domain-containing protein- - -
T [auth ad]mS51- - -
V [auth i]uS15m- - -
BA [auth at]mS66- - -
IA [auth z]mS47 - -
VA [auth b]bS6m
J [auth aw]mS69- - -
L [auth ak]mS58- - -
M [auth aj]mS57- - -
N [auth ag]mS55- - -
O [auth af]mS54- - -
P [auth ae]mS53- - -
Q [auth l]mS52- - -
R [auth ac]mS50- - -
S [auth ab]mS49- - -
B [auth s]mS33- - -
U [auth m]bS18m- - -
W [auth f]uS11m
X [auth c]uS8m
Y [auth d]uS9m
Z [auth ba]mS73- - -
AA [auth av]mS68- - -
CA [auth ar]AKAP7_NLS domain-containing protein- - -
C [auth r]mS29- -
DA [auth aq]mS63- - -
EA [auth ap]mS62- - -
FA [auth ao]mS61- - -
GA [auth ai]mS56- - -
HA [auth an]mS60- - -
JA [auth y]Sod_Fe_C domain-containing protein - -
KA [auth x]Superoxide dismutase, putative -
LA [auth w]Protein FYV4, mitochondrial- -
MA [auth v]mS37- - -
NA [auth bb]mS38- - -
OA [auth t]Trafficking protein particle complex subunit-
PA [auth al]mS59- - -
QA [auth q]mS26- - -
RA [auth p]mS23- - -
SA [auth Ca]mS22- - -
TA [auth g]bS21m- - -
UA [auth j]bS16m- - -
WA [auth bd]MURF5---
E [auth h]uS14m- - -
XA [auth a]Ribosomal_S5_C domain-containing protein
YA [auth bc]mt-iF3- - -
ZA [auth aa]mS48- -
AB [auth k]30S Ribosomal protein S17-like protein
BB [auth be]Ribosome protein S12- -
CB [auth as]mS65- - -
DB [auth A],
EB [auth 2]		RNA (478-MER)---
F [auth e]uS10m- - -
G [auth az]mS72- - -
H [auth ay]mS71- -
I [auth ax]mS70- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
K [auth au]IPR001763Rhodanese-like domainDomain
K [auth au]IPR036873Rhodanese-like domain superfamilyHomologous Superfamily
T [auth ad]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
V [auth i]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
BA [auth at]IPR025487Probable Zinc-ribbon domainDomain
IA [auth z]IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
IA [auth z]IPR032259Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H typeFamily
IA [auth z]IPR045004Enoyl-CoA hydratase/isomerase domainDomain
VA [auth b]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
VA [auth b]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
N [auth ag]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
O [auth af]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
U [auth m]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
W [auth f]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
X [auth c]IPR000630Small ribosomal subunit protein uS8Family
X [auth c]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
Y [auth d]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Y [auth d]IPR000754Small ribosomal subunit protein uS9Family
Y [auth d]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
AA [auth av]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
CA [auth ar]IPR019510A-kinase anchor protein 7-like, phosphoesterase domainDomain
CA [auth ar]IPR009097Cyclic phosphodiesteraseHomologous Superfamily
C [auth r]IPR019368Small ribosomal subunit protein mS29Family
HA [auth an]IPR036894Nucleoid-associated protein YbaB-like domain superfamilyHomologous Superfamily
JA [auth y]IPR019832Manganese/iron superoxide dismutase, C-terminalDomain
JA [auth y]IPR047002T-complex protein 10, C-terminal domain superfamilyHomologous Superfamily
JA [auth y]IPR036314Manganese/iron superoxide dismutase, C-terminal domain superfamilyHomologous Superfamily
KA [auth x]IPR036324Manganese/iron superoxide dismutase, N-terminal domain superfamilyHomologous Superfamily
KA [auth x]IPR019832Manganese/iron superoxide dismutase, C-terminalDomain
KA [auth x]IPR036314Manganese/iron superoxide dismutase, C-terminal domain superfamilyHomologous Superfamily
LA [auth w]IPR039603Small ribosomal subunit protein mS41Family
LA [auth w]IPR019083IGR domainDomain
OA [auth t]IPR016696TRAPP I complex, subunit 5Family
XA [auth a]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
AB [auth k]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AB [auth k]IPR000266Small ribosomal subunit protein uS17Family
BB [auth be]IPR035306Small ribosomal subunit protein uS12mFamily
F [auth e]IPR018392LysM domainDomain