7KBJ | pdb_00007kbj

Co-crystal structure of alpha glucosidase with compound 9

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H [auth D]	SCOP2B Superfamily	EGF/Laminin-like	8106403	3000412	SCOP2B (2022-06-29)
H [auth D]	SCOP2B Superfamily	EGF/Laminin-like	8106404	3000412	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	EGF/Laminin-like	8106404	3000412	SCOP2B (2022-06-29)
G [auth C]	SCOP2B Superfamily	(Trans)glycosidases	8090457	3000313	SCOP2B (2022-06-29)
G [auth C]	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8090459	3001528	SCOP2B (2022-06-29)
G [auth C]	SCOP2B Superfamily	YicI C-terminal domain-like	8090453	3000267	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	(Trans)glycosidases	8090457	3000313	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8090459	3001528	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	YicI C-terminal domain-like	8090453	3000267	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth G]	RNA_pol_Rpb1_5	e7kbjG01	A: a/b three-layered sandwiches	X: Rossmann-like	H: all-alpha NTP pyrophosphatases	T: Hypothetical protein AF_0060	F: RNA_pol_Rpb1_5	ECOD (v294.1)
H [auth D]	Glyco_hydro_2	e7kbjD1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_hydro_2	ECOD (v294.1)
D [auth B]	Glyco_hydro_2	e7kbjB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_hydro_2	ECOD (v294.1)
G [auth C]	TIL_OTOGL_Mucin	e7kbjC1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: TIL_OTOGL_Mucin	ECOD (v294.1)
C [auth A]	TIL_OTOGL_Mucin	e7kbjA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: TIL_OTOGL_Mucin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G [auth C]	2.60.40.1180	Mainly Beta	Sandwich	Immunoglobulin-like	Golgi alpha-mannosidase II	CATH (utative)
C [auth A]	2.60.40.1180	Mainly Beta	Sandwich	Immunoglobulin-like	Golgi alpha-mannosidase II	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth G], E [auth I]	PF13802	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain (Gal_mutarotas_2)	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain	This entry represents the first of three common domains found in Glycosyl hydrolase 31 family proteins. It has a galactose mutarotase superfamily fold.	Domain
C [auth A], G [auth C]	PF21365	Glycosyl hydrolase family 31 C-terminal domain (Glyco_hydro_31_3rd)	Glycosyl hydrolase family 31 C-terminal domain	Glycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry represents the 3rd beta sandwich domain.	Domain
C [auth A], G [auth C]	PF01055	Glycosyl hydrolases family 31 TIM-barrel domain (Glyco_hydro_31_2nd)	Glycosyl hydrolases family 31 TIM-barrel domain	Glycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry corresponds to the second domain of family 31 enzymes and adopts a TIM-barrel fold.	Domain
B [auth H], F [auth J]	PF13802	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain (Gal_mutarotas_2)	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain	This entry represents the first of three common domains found in Glycosyl hydrolase 31 family proteins. It has a galactose mutarotase superfamily fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth G], E [auth I]	Neutral alpha-glucosidase AB Trypsin-cleaved Fragment #1	binding carbohydrate binding alpha-glucosidase activity hydrolase activity, acting on glycosyl bonds glucosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity Glc2Man9GlcNAc2 oligosaccharide glucosidase activity glucan 1,3-alpha-glucosidase activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process N-glycan processing glycoprotein metabolic process macromolecule biosynthetic process protein N-linked glycosylation biosynthetic process protein metabolic process macromolecule metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex glucosidase II complex intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle endoplasmic reticulum cytoplasm glucosidase complex endoplasmic reticulum protein-containing complex membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex glucosidase II complex intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle endoplasmic reticulum cytoplasm glucosidase complex endoplasmic reticulum protein-containing complex pigment granule intracellular vesicle melanosome cytoplasmic vesicle vesicle Golgi apparatus
D [auth B], H [auth D]	Glucosidase 2 subunit beta	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding transmembrane transporter binding protein-containing complex binding phosphoprotein binding kinase binding protein kinase C binding enzyme binding protein kinase binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding transmembrane transporter binding protein-containing complex binding phosphoprotein binding kinase binding protein kinase C binding enzyme binding protein kinase binding RNA binding nucleic acid binding	developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development nitrogen cycle metabolic process metabolic process cellular process carbohydrate derivative biosynthetic process glycoprotein biosynthetic process developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development nitrogen cycle metabolic process metabolic process cellular process carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process N-glycan processing glycoprotein metabolic process macromolecule biosynthetic process protein N-linked glycosylation biosynthetic process protein metabolic process macromolecule metabolic process regulation of neuron projection development regulation of cellular component organization regulation of cellular process cellular developmental process cell projection organization negative regulation of biological process cell development neuron projection development cellular component organization neurogenesis neuron differentiation cell differentiation negative regulation of cellular process cellular component organization or biogenesis negative regulation of cell projection organization regulation of biological process plasma membrane bounded cell projection organization negative regulation of cellular component organization regulation of cell projection organization biological regulation nervous system development negative regulation of neuron projection development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization embryo development ending in birth or egg hatching chordate embryonic development embryo development in utero embryonic development	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex glucosidase II complex intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle endoplasmic reticulum cytoplasm glucosidase complex endoplasmic reticulum protein-containing complex
C [auth A], G [auth C]	Neutral alpha-glucosidase AB Trypsin-cleaved Fragment #3	binding carbohydrate binding alpha-glucosidase activity hydrolase activity, acting on glycosyl bonds glucosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity Glc2Man9GlcNAc2 oligosaccharide glucosidase activity glucan 1,3-alpha-glucosidase activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process N-glycan processing glycoprotein metabolic process macromolecule biosynthetic process protein N-linked glycosylation biosynthetic process protein metabolic process macromolecule metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex glucosidase II complex intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle endoplasmic reticulum cytoplasm glucosidase complex endoplasmic reticulum protein-containing complex membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex glucosidase II complex intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle endoplasmic reticulum cytoplasm glucosidase complex endoplasmic reticulum protein-containing complex pigment granule intracellular vesicle melanosome cytoplasmic vesicle vesicle Golgi apparatus
B [auth H], F [auth J]	Neutral alpha-glucosidase AB Trypsin-cleaved Fragment #2	binding carbohydrate binding alpha-glucosidase activity hydrolase activity, acting on glycosyl bonds glucosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity Glc2Man9GlcNAc2 oligosaccharide glucosidase activity glucan 1,3-alpha-glucosidase activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process N-glycan processing glycoprotein metabolic process macromolecule biosynthetic process protein N-linked glycosylation biosynthetic process protein metabolic process macromolecule metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex glucosidase II complex intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle endoplasmic reticulum cytoplasm glucosidase complex endoplasmic reticulum protein-containing complex membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex glucosidase II complex intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle endoplasmic reticulum cytoplasm glucosidase complex endoplasmic reticulum protein-containing complex pigment granule intracellular vesicle melanosome cytoplasmic vesicle vesicle Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth G], E [auth I]	IPR030459	Glycosyl hydrolases family 31, conserved site	Conserved Site
A [auth G], E [auth I]	IPR000322	Glycoside hydrolase family 31, TIM barrel domain	Domain
A [auth G], E [auth I]	IPR048395	Glycosyl hydrolase family 31, C-terminal domain	Domain
A [auth G], E [auth I]	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A [auth G], E [auth I]	IPR030458	Glycosyl hydrolases family 31, active site	Active Site
A [auth G], E [auth I]	IPR013780	Glycosyl hydrolase, all-beta	Homologous Superfamily
A [auth G], E [auth I]	IPR025887	Glycoside hydrolase family 31, N-terminal domain	Domain
A [auth G], E [auth I]	IPR011013	Galactose mutarotase-like domain superfamily	Homologous Superfamily
D [auth B], H [auth D]	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
D [auth B], H [auth D]	IPR009011	Mannose-6-phosphate receptor binding domain superfamily	Homologous Superfamily
D [auth B], H [auth D]	IPR028146	Glucosidase II beta subunit, N-terminal	Domain
D [auth B], H [auth D]	IPR044865	MRH domain	Domain
D [auth B], H [auth D]	IPR036055	LDL receptor-like superfamily	Homologous Superfamily
D [auth B], H [auth D]	IPR036607	Glucosidase 2 subunit beta-like	Domain
D [auth B], H [auth D]	IPR039794	Glucosidase II beta subunit-like	Family
D [auth B], H [auth D]	IPR002048	EF-hand domain	Domain
D [auth B], H [auth D]	IPR011992	EF-hand domain pair	Homologous Superfamily
C [auth A], G [auth C]	IPR030459	Glycosyl hydrolases family 31, conserved site	Conserved Site
C [auth A], G [auth C]	IPR000322	Glycoside hydrolase family 31, TIM barrel domain	Domain
C [auth A], G [auth C]	IPR048395	Glycosyl hydrolase family 31, C-terminal domain	Domain
C [auth A], G [auth C]	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
C [auth A], G [auth C]	IPR030458	Glycosyl hydrolases family 31, active site	Active Site
C [auth A], G [auth C]	IPR013780	Glycosyl hydrolase, all-beta	Homologous Superfamily
C [auth A], G [auth C]	IPR025887	Glycoside hydrolase family 31, N-terminal domain	Domain
C [auth A], G [auth C]	IPR011013	Galactose mutarotase-like domain superfamily	Homologous Superfamily
B [auth H], F [auth J]	IPR030459	Glycosyl hydrolases family 31, conserved site	Conserved Site
B [auth H], F [auth J]	IPR000322	Glycoside hydrolase family 31, TIM barrel domain	Domain
B [auth H], F [auth J]	IPR048395	Glycosyl hydrolase family 31, C-terminal domain	Domain
B [auth H], F [auth J]	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
B [auth H], F [auth J]	IPR030458	Glycosyl hydrolases family 31, active site	Active Site
B [auth H], F [auth J]	IPR013780	Glycosyl hydrolase, all-beta	Homologous Superfamily
B [auth H], F [auth J]	IPR025887	Glycoside hydrolase family 31, N-terminal domain	Domain
B [auth H], F [auth J]	IPR011013	Galactose mutarotase-like domain superfamily	Homologous Superfamily