7MEM
CryoEM structure of monoclonal Fab 045-09 2B05 binding the lateral patch of influenza virus H1 HA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth E] | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8087794 | 3001342 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8087794 | 3001342 | SCOP2B (2022-06-29) |
I [auth F] | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8087794 | 3001342 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8087956 | 3001616 | SCOP2B (2022-06-29) |
H [auth A] | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8087956 | 3001616 | SCOP2B (2022-06-29) |
L [auth B] | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8087956 | 3001616 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | PF00509 | e7memE1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00509 | ECOD (1.6) |
E [auth C] | PF00509 | e7memC1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00509 | ECOD (1.6) |
I [auth F] | PF00509 | e7memF1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00509 | ECOD (1.6) |
B [auth L] | PF07686 | e7memL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth J] | PF07686 | e7memJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J [auth K] | PF07686 | e7memK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth H] | PF07686 | e7memH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
G | PF07686 | e7memG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
K [auth I] | PF07686 | e7memI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D | PF00509 | e7memD1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: PF00509 | ECOD (1.6) |
H [auth A] | PF00509 | e7memA1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: PF00509 | ECOD (1.6) |
L [auth B] | PF00509 | e7memB1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: PF00509 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth L], F [auth J], J [auth K] | Light Chain | IGKV1 | Kappa | hemagglutinin ha1 chain | SAbDab (2024-04-26) |
C [auth H], G, K [auth I] | Heavy Chain | IGHV3 | - | hemagglutinin ha1 chain | SAbDab (2024-04-26) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E], E [auth C], I [auth F] | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
D, H [auth A], L [auth B] | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth E], E [auth C], I [auth F] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
A [auth E], E [auth C], I [auth F] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
A [auth E], E [auth C], I [auth F] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
A [auth E], E [auth C], I [auth F] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |
D, H [auth A], L [auth B] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
D, H [auth A], L [auth B] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
D, H [auth A], L [auth B] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
D, H [auth A], L [auth B] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |