Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth E] | Beta-lactamase2 | e7qiwE1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| D [auth G] | Beta-lactamase2 | e7qiwG1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| F [auth I] | Beta-lactamase2 | e7qiwI1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| G [auth J] | Beta-lactamase2 | e7qiwJ1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| H [auth K] | Beta-lactamase2 | e7qiwK1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| I [auth L] | e7qiwL01 | A: alpha bundles | X: Rossmann-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: | ECOD (develop294) | |
| J [auth M] | Beta-lactamase2 | e7qiwM1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| K [auth N] | Beta-lactamase2 | e7qiwN1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| L [auth O] | Beta-lactamase2 | e7qiwO1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| M [auth P] | Beta-lactamase2 | e7qiwP1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| N [auth Q] | Beta-lactamase2 | e7qiwQ1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| O [auth R] | Beta-lactamase2 | e7qiwR1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| Q [auth T] | Beta-lactamase2 | e7qiwT1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| R [auth U] | Beta-lactamase2 | e7qiwU1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| S [auth V] | Beta-lactamase2 | e7qiwV1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| V [auth Y] | Beta-lactamase2 | e7qiwY1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| X [auth a] | Beta-lactamase2 | e7qiwa1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| Y [auth b] | Beta-lactamase2 | e7qiwb1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| Z [auth c] | Beta-lactamase2 | e7qiwc1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| BA [auth e] | Beta-lactamase2 | e7qiwe1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| FA [auth i] | Beta-lactamase2 | e7qiwi1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| GA [auth j] | Beta-lactamase2 | e7qiwj1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| HA [auth k] | e7qiwk01 | A: alpha bundles | X: Rossmann-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: | ECOD (develop294) | |
| IA [auth l] | Beta-lactamase2 | e7qiwl1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| KA [auth n] | Beta-lactamase2 | e7qiwn1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| LA [auth o] | Beta-lactamase2 | e7qiwo1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| MA [auth p] | Beta-lactamase2 | e7qiwp1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| NA [auth q] | Beta-lactamase2 | e7qiwq1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| OA [auth r] | Beta-lactamase2 | e7qiwr1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| E [auth H] | Beta-lactamase2 | e7qiwH1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| JA [auth m] | Beta-lactamase2 | e7qiwm1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| EA [auth h] | Beta-lactamase2 | e7qiwh1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| DA [auth g] | Beta-lactamase2 | e7qiwg1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| CA [auth f] | Beta-lactamase2 | e7qiwf1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| AA [auth d] | Beta-lactamase2 | e7qiwd1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| W [auth Z] | Beta-lactamase2 | e7qiwZ1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| U [auth X] | Beta-lactamase2 | e7qiwX1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| T [auth W] | Beta-lactamase2 | e7qiwW1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| B [auth F] | Beta-lactamase2 | e7qiwF1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
| P [auth S] | e7qiwS01 | A: alpha bundles | X: Rossmann-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: | ECOD (develop294) | |
| A [auth D] | Beta-lactamase2 | e7qiwD1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: Beta-lactamase2 | ECOD (develop294) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| D [auth G] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| D [auth G] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
| D [auth G] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
| F [auth I] | PF08079 | Ribosomal L30 N-terminal domain (Ribosomal_L30_N) | Ribosomal L30 N-terminal domain | This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. | Domain |
| F [auth I] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| G [auth J] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| G [auth J] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| H [auth K] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| H [auth K] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
| I [auth L] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
| I [auth L] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| J [auth M] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| J [auth M] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
| J [auth M] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| K [auth N] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| K [auth N] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| L [auth O] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. | Domain |
| L [auth O] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| M [auth P] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| M [auth P] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| N [auth Q] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
| O [auth R] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| O [auth R] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
| Q [auth T] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| Q [auth T] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| R [auth U] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| V [auth Y] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
| E [auth H] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | This entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. | Domain |
| E [auth H] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
| W [auth Z] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| U [auth X] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| B [auth F] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
| B [auth F] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
| B [auth F] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| P [auth S] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
| A [auth D] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| C [auth E] | HIC | Parent Component: HIS :  AA0317 :  1'-methyl-L-histidine MOD:00322 |
| OA [auth r] | THC | Parent Component: THR :  AA0317 |
| SA [auth 8] | A2M | Parent Component: A :  AA0317 |
| SA [auth 8] | OMG | Parent Component: G :  AA0317 |
| SA [auth 8] | PSU | Parent Component: U :  AA0317 |
| QA [auth 2] | 1MA | Parent Component: A :  AA0317 |
| QA [auth 2] | 5MC | Parent Component: C :  AA0317 |
| QA [auth 2] | A2M | Parent Component: A :  AA0317 |
| QA [auth 2] | OMC | Parent Component: C :  AA0317 |
| QA [auth 2] | OMG | Parent Component: G :  AA0317 |
| QA [auth 2] | OMU | Parent Component: U :  AA0317 |
| QA [auth 2] | PSU | Parent Component: U :  AA0317 |
| QA [auth 2] | UR3 | Parent Component: U :  AA0317 |














