8K39

Structure of the bacteriophage lambda portal vertex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth 0]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
AA [auth S]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
B [auth 1]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
BA [auth T]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
C [auth 2]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
D [auth 3]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
E [auth 4]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
F [auth 5]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
G [auth 6]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
H [auth 7]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
I [auth A]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
J [auth B]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
K [auth C]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
L [auth D]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
M [auth E]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
N [auth F]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
O [auth G]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
OA [auth g]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
P [auth H]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
PA [auth h]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
Q [auth I]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
R [auth J]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
S [auth K]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
T [auth L]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
U [auth M]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
V [auth N]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
W [auth O]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
X [auth P]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
Y [auth Q]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
Z [auth R]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], R [auth J], S [auth K], T [auth L], U [auth M], V [auth N], W [auth O], X [auth P], Y [auth Q], Z [auth R]	PF05136	Phage portal protein, lambda family (Phage_portal_2)	Phage portal protein, lambda family	-	Family
A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], R [auth J], S [auth K], T [auth L], U [auth M], V [auth N], W [auth O], X [auth P], Y [auth Q], Z [auth R]	PF03864	Phage major capsid protein E (Phage_cap_E)	Phage major capsid protein E	-	Family
CA [auth U], DA [auth V], EA [auth W], FA [auth X], GA [auth Y], CA [auth U], DA [auth V], EA [auth W], FA [auth X], GA [auth Y], HA [auth Z], IA [auth a], JA [auth b], KA [auth c], LA [auth d], MA [auth e], NA [auth f]	PF05136	Phage portal protein, lambda family (Phage_portal_2)	Phage portal protein, lambda family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], R [auth J], S [auth K], T [auth L], U [auth M], V [auth N], W [auth O], X [auth P], Y [auth Q], Z [auth R]	Major capsid protein	-	-	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region
CA [auth U], DA [auth V], EA [auth W], FA [auth X], GA [auth Y], CA [auth U], DA [auth V], EA [auth W], FA [auth X], GA [auth Y], HA [auth Z], IA [auth a], JA [auth b], KA [auth c], LA [auth d], MA [auth e], NA [auth f]	Portal protein B	DNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly	protein-containing complex viral capsid virion component viral portal complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], R [auth J], S [auth K], T [auth L], U [auth M], V [auth N], W [auth O], X [auth P], Y [auth Q], Z [auth R]	IPR005564	Major capsid protein GpE	Family
CA [auth U], DA [auth V], EA [auth W], FA [auth X], GA [auth Y], CA [auth U], DA [auth V], EA [auth W], FA [auth X], GA [auth Y], HA [auth Z], IA [auth a], JA [auth b], KA [auth c], LA [auth d], MA [auth e], NA [auth f]	IPR006429	Phage portal protein, lambda family	Family