H [auth BX] PF00276 Ribosomal protein L23 (Ribosomal_L23) Ribosomal protein L23 - Family Y [auth BT] PF03946 Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) Ribosomal protein L11, N-terminal domain The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain Y [auth BT] PF00298 Ribosomal protein L11, RNA binding domain (Ribosomal_L11) Ribosomal protein L11, RNA binding domain Domain PA [auth BY] PF16906 Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) Ribosomal proteins L26 eukaryotic, L24P archaeal - Family PA [auth BY] PF00467 KOW motif (KOW) KOW motif - Family QA [auth BB] PF01779 Ribosomal L29e protein family (Ribosomal_L29e) Ribosomal L29e protein family - Family ZA [auth BO] PF00935 Ribosomal protein L44 (Ribosomal_L44) Ribosomal protein L44 - Family FC [auth AG] PF01251 Ribosomal protein S7e (Ribosomal_S7e) Ribosomal protein S7e - Family FC [auth AG] PF00253 Ribosomal protein S14p/S29e (Ribosomal_S14) Ribosomal protein S14p/S29e - Family CC [auth AF] PF01092 Ribosomal protein S6e (Ribosomal_S6e) Ribosomal protein S6e - Family CC [auth AF] PF00400 WD domain, G-beta repeat (WD40) WD domain, G-beta repeat - Repeat ZB [auth AE] PF00177 Ribosomal protein S7p/S5e (Ribosomal_S7) Ribosomal protein S7p/S5e This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain WB [auth AD] PF00900 Ribosomal family S4e (Ribosomal_S4e) Ribosomal family S4e - Family WB [auth AD] PF08071 RS4NT (NUC023) domain (RS4NT) RS4NT (NUC023) domain This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain TB [auth AC] PF07650 KH domain (KH_2) KH domain Domain TB [auth AC] PF00189 Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) Ribosomal protein S3, C-terminal domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain TB [auth AC] PF01599 Ribosomal protein S27a (Ribosomal_S27) Ribosomal protein S27a This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2]. Domain G [auth BL] PF00832 Ribosomal L39 protein (Ribosomal_L39) Ribosomal L39 protein - Family G [auth BL] PF01294 Ribosomal protein L13e (Ribosomal_L13e) Ribosomal protein L13e - Family QB [auth AB] PF01200 Ribosomal protein S28e (Ribosomal_S28e) Ribosomal protein S28e Domain NB [auth AA] PF01667 Ribosomal protein S27 (Ribosomal_S27e) Ribosomal protein S27 - Family HB [auth DC] PF00583 Acetyltransferase (GNAT) family (Acetyltransf_1) Acetyltransferase (GNAT) family - Family GB [auth BF] PF00327 Ribosomal protein L30p/L7e (Ribosomal_L30) Ribosomal protein L30p/L7e This family includes prokaryotic L30 and eukaryotic L7. Domain GB [auth BF] PF01247 Ribosomal protein L35Ae (Ribosomal_L35Ae) Ribosomal protein L35Ae This entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain DB [auth DA] PF00583 Acetyltransferase (GNAT) family (Acetyltransf_1) Acetyltransferase (GNAT) family - Family CB [auth BE] PF01655 Ribosomal protein L32 (Ribosomal_L32e) Ribosomal protein L32 - Family CB [auth BE] PF01159 Ribosomal protein L6e (Ribosomal_L6e) Ribosomal protein L6e - Family YA [auth B] PF17144 Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) Ribosomal large subunit proteins 60S L5, and 50S L18 - Family YA [auth B] PF14204 Ribosomal L18 C-terminal region (Ribosomal_L18_c) Ribosomal L18 C-terminal region This domain is the C-terminal end of ribosomal L18/L5 proteins. Domain VA [auth BN] PF00827 Ribosomal L15 (Ribosomal_L15e) Ribosomal L15 - Family UA [auth BC] PF14374 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) 60S ribosomal protein L4 C-terminal domain This family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain UA [auth BC] PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family UA [auth BC] PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. Domain TA [auth BZ] PF01777 Ribosomal L27e protein family (Ribosomal_L27e) Ribosomal L27e protein family - Family TA [auth BZ] PF00467 KOW motif (KOW) KOW motif - Family RA [auth BS] PF17777 Insertion domain in 60S ribosomal protein L10P (RL10P_insert) Insertion domain in 60S ribosomal protein L10P This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. Domain RA [auth BS] PF00466 Ribosomal protein L10 (Ribosomal_L10) Ribosomal protein L10 - Family RA [auth BS] PF01775 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain NA [auth BM] PF01020 Ribosomal L40e family (Ribosomal_L40e) Ribosomal L40e family Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. Domain NA [auth BM] PF01929 Ribosomal protein L14 (Ribosomal_L14e) Ribosomal protein L14 - Family D [auth AT] PF00338 Ribosomal protein S10p/S20e (Ribosomal_S10) Ribosomal protein S10p/S20e This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain LA [auth BA] PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain Domain LA [auth BA] PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain FA [auth AZ] PF00318 Ribosomal protein S2 (Ribosomal_S2) Ribosomal protein S2 - Family FA [auth AZ] PF16122 40S ribosomal protein SA C-terminus (40S_SA_C) 40S ribosomal protein SA C-terminus - Family EA [auth BJ] PF00281 Ribosomal protein L5 (Ribosomal_L5) Ribosomal protein L5 Domain EA [auth BJ] PF01907 Ribosomal protein L37e (Ribosomal_L37e) Ribosomal protein L37e - Family EA [auth BJ] PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain AA [auth BW] PF01246 Ribosomal protein L24e (Ribosomal_L24e) Ribosomal protein L24e Domain Z [auth BI] PF00252 Ribosomal protein L16p/L10e (Ribosomal_L16) Ribosomal protein L16p/L10e Domain Z [auth BI] PF01158 Ribosomal protein L36e (Ribosomal_L36e) Ribosomal protein L36e - Family V [auth BV] PF00238 Ribosomal protein L14p/L23e (Ribosomal_L14) Ribosomal protein L14p/L23e Domain U [auth BH] PF00831 Ribosomal L29 protein (Ribosomal_L29) Ribosomal L29 protein - Family U [auth BH] PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 Domain S [auth DB] PF13181 Tetratricopeptide repeat (TPR_8) Tetratricopeptide repeat - Repeat S [auth DB] PF12569 N-terminal acetyltransferase A, auxiliary subunit (NatA_aux_su) N-terminal acetyltransferase A, auxiliary subunit - Repeat M [auth BR] PF01778 Ribosomal L28e protein family (Ribosomal_L28e) Ribosomal L28e protein family - Family M [auth BR] PF01280 Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) Ribosomal protein L19e, N-terminal domain This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain M [auth BR] PF25476 Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) Ribosomal protein L19e, C-terminal domain This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain A [auth BP] PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain A [auth BP] PF01780 Ribosomal L37ae protein family (Ribosomal_L37ae) Ribosomal L37ae protein family - Family 
