1QNR

The 3-D structure of a Trichoderma reesei b-mannanase from glycoside hydrolase family 5


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.52M AMMONIUM SULPHATE, 0.1M GLYCINE PH 8.5
Crystal Properties
Matthews coefficientSolvent content
238

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.748α = 90
b = 54.922β = 111.73
c = 61.363γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDADSC QUANTUM 4MIRRORSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.42091.20.06317.33.25097911.65
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.4250.30.242.62.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.419.85636391.20.1240.171RANDOM12.6
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.6850.0390.7420.933
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor36.7
p_staggered_tor11.2
p_planar_tor5.3
p_scangle_it3.467
p_mcangle_it2.903
p_scbond_it2.751
p_mcbond_it2.303
p_multtor_nbd0.262
p_singtor_nbd0.162
p_chiral_restr0.155
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor36.7
p_staggered_tor11.2
p_planar_tor5.3
p_scangle_it3.467
p_mcangle_it2.903
p_scbond_it2.751
p_mcbond_it2.303
p_multtor_nbd0.262
p_singtor_nbd0.162
p_chiral_restr0.155
p_planar_d0.044
p_angle_d0.038
p_plane_restr0.0294
p_bond_d0.023
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2668
Nucleic Acid Atoms
Solvent Atoms494
Heterogen Atoms96

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling