X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2FFU 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293PEG8000, HEPES
Crystal Properties
Matthews coefficientSolvent content
1.935.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.31α = 90
b = 69.31β = 90
c = 169.78γ = 120
Symmetry
Space GroupP 61

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95PIXELDECTRIS PILATUS3 S 6M2017-08-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.10.97741ALS5.0.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.860.0292.10.1075.324263211.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.993.70.4710.7151.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2FFU1.856.6637096199891.710.16960.167190.2155RANDOM16.453
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.17-0.09-0.170.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.954
r_dihedral_angle_4_deg21.359
r_dihedral_angle_3_deg14.282
r_dihedral_angle_1_deg6.99
r_long_range_B_refined4.436
r_long_range_B_other4.362
r_scangle_other3.041
r_mcangle_it2.443
r_mcangle_other2.443
r_scbond_other1.989
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.954
r_dihedral_angle_4_deg21.359
r_dihedral_angle_3_deg14.282
r_dihedral_angle_1_deg6.99
r_long_range_B_refined4.436
r_long_range_B_other4.362
r_scangle_other3.041
r_mcangle_it2.443
r_mcangle_other2.443
r_scbond_other1.989
r_scbond_it1.988
r_angle_refined_deg1.605
r_mcbond_it1.579
r_mcbond_other1.574
r_angle_other_deg1.013
r_chiral_restr0.086
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3955
Nucleic Acid Atoms25
Solvent Atoms327
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing