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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Planktothrix agardhii"

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Planktothrix agardhii (18)
	Planktothrix agardhii NIES-596 (5)
	synthetic construct (2)

Taxonomy

	Bacteria (23)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (20)
	SOLID-STATE NMR (2)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (9)
	2.0 - 2.5 (9)

Release Date

	2010 - 2014 (5)
	2015 - 2019 (11)
	2020 - 2024 (7)

Enzyme Classification Name

Transferases (1)

Symmetry Type

	Asymmetric (19)
	Cyclic (4)

SCOP Classification

	Multi-domain proteins (alpha and beta) (3)
	Alpha and beta proteins (a/b) (1)

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1 to 23 of 23 Structures

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2MWH \| pdb_00002mwh	Download File View File

NMR solution structure of ligand-free OAA

Lee, D., Carneiro, M.G., Koharudin, L.M., Griesinger, C., Gronenborn, A.M., Ban, D., Sabo, T., Trigo-Mourino, P., Mazur, A.

(2015) Angew Chem Int Ed Engl 54: 6462-6465

Released	2015-04-22
Method	SOLUTION NMR
Organisms	Planktothrix agardhii
Macromolecule	Anti-HIV lectin OAA (protein)

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3OBL \| pdb_00003obl	Download File View File

Crystal structure of the potent anti-HIV cyanobacterial lectin from Oscillatoria Agardhii

Koharudin, L.M.I., Furey, W., Gronenborn, A.M.

(2011) J Biological Chem 286: 1588-1597

Released	2010-10-20
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Planktothrix agardhii
Macromolecule	Lectin (protein)
Unique Ligands	CXS

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3S5V \| pdb_00003s5v	Download File View File

Structure of the cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) in free state obtained at -180 degrees Celsius

Koharudin, L.M.I., Gronenborn, A.M.

(2011) Structure 19: 1170-1181

Released	2011-06-15
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Planktothrix agardhii
Macromolecule	Lectin (protein)
Unique Ligands	SO4

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3S5X \| pdb_00003s5x	Download File View File

Structure of the cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) in complex with a3,a6 mannopentaose

Koharudin, L.M.I., Gronenborn, A.M.

(2011) Structure 19: 1170-1181

Released	2011-06-15
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Planktothrix agardhii
Macromolecule	Lectin (protein)
Unique Ligands	MAN
Unique branched monosaccharides	BMA, MAN

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3S60 \| pdb_00003s60	Download File View File

Structure of the cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) in free state obtained at 25 degree Celsius

Koharudin, L.M.I., Gronenborn, A.M.

(2011) Structure 19: 1170-1181

Released	2011-06-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Planktothrix agardhii
Macromolecule	Lectin (protein)

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4D4G \| pdb_00004d4g	Download File View File

Understanding bi-specificity of A-domains

Kaljunen, H., Schiefelbein, S.H.H., Stummer, D., Kozak, S., Meijers, R., Christiansen, G., Rentmeister, A.

(2015) Angew Chem Int Ed Engl 54: 8833

Released	2015-07-01
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Planktothrix agardhii
Macromolecule	APNAA1 (protein)
Unique Ligands	ANP, GOL, MG

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4D4H \| pdb_00004d4h	Download File View File

Understanding bi-specificity of A-domains

Kaljunen, H., Schiefelbein, S.H.H., Stummer, D., Kozak, S., Meijers, R., Christiansen, G., Rentmeister, A.

(2015) Angew Chem Int Ed Engl 54: 8833

Released	2015-07-01
Method	X-RAY DIFFRACTION 2.019 Å
Organisms	Planktothrix agardhii
Macromolecule	APNAA1 (protein)
Unique Ligands	GOL

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4D4I \| pdb_00004d4i	Download File View File

Understanding bi-specificity of A-domains

Kaljunen, H., Schiefelbein, S.H.H., Stummer, D., Kozak, S., Meijers, R., Christiansen, G., Rentmeister, A.

(2015) Angew Chem Int Ed Engl 54: 8833

Released	2015-07-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Planktothrix agardhii
Macromolecule	APNAA1 (protein)
Unique Ligands	ANP, ARG, GOL, MG

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4D56 \| pdb_00004d56	Download File View File

Understanding bi-specificity of A-domains

Kaljunen, H., Schiefelbein, S.H.H., Stummer, D., Kozak, S., Meijers, R., Christiansen, G., Rentmeister, A.

(2015) Angew Chem Int Ed Engl 54: 8833

Released	2015-07-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Planktothrix agardhii
Macromolecule	APNAA1 (protein)
Unique Ligands	AMP, GOL, PO4, TYR

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4D57 \| pdb_00004d57	Download File View File

Understanding bi-specificity of A-domains

Kaljunen, H., Schiefelbein, S.H.H., Stummer, D., Kozak, S., Meijers, R., Christiansen, G., Rentmeister, A.

(2015) Angew Chem Int Ed Engl 54: 8833

Released	2015-07-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Planktothrix agardhii
Macromolecule	APNA A1 (protein)
Unique Ligands	AMP, ARG, GOL, PO4

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4H6W \| pdb_00004h6w	Download File View File

Structure of Prenylagaramide maturation protease PagA

Nair, S.K., Agarwal, V.

(2012) Chem Biol 19: 1411-1422

Released	2012-10-03
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Planktothrix agardhii NIES-596
Macromolecule	N-terminal cyanobactin protease (protein)

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5TTY \| pdb_00005tty	Download File View File

PagF prenyltransferase

Hao, Y., Nair, S.K.

(2016) Proc Natl Acad Sci U S A 113: 14037-14042

Released	2016-11-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Planktothrix agardhii NIES-596
Macromolecule	PagF prenyltransferase (protein)
Unique Ligands	PEG

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5TU4 \| pdb_00005tu4	Download File View File

PagF with Boc-Tyr and DMSPP

Hao, Y., Nair, S.K.

(2016) Proc Natl Acad Sci U S A 113: 14037-14042

Released	2016-11-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Planktothrix agardhii NIES-596
Macromolecule	PagF prenyltransferase (protein)
Unique Ligands	B1C, DST, MG

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5TU5 \| pdb_00005tu5	Download File View File

PagF prenyltransferase with Tyr-Tyr-Tyr and DMSPP

Hao, Y., Nair, S.K.

(2016) Proc Natl Acad Sci U S A 113: 14037-14042

Released	2016-11-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Planktothrix agardhii NIES-596 synthetic construct
Macromolecule	PagF prenyltransferase (protein) TYR-TYR-TYR (protein)
Unique Ligands	DST, MG

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5TU6 \| pdb_00005tu6	Download File View File

PagF prenyltransferase with cyclic[INPYLYP] and DMSPP

Hao, Y., Nair, S.K.

(2016) Proc Natl Acad Sci U S A 113: 14037-14042

Released	2016-11-30
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Planktothrix agardhii NIES-596 synthetic construct
Macromolecule	PagF prenyltransferase (protein) cyclic[INPYLYP] peptide (protein)
Unique Ligands	DST, MET, MG

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6PGN \| pdb_00006pgn	Download File View File

PagF single mutant with GPP

Nair, S.K., Hao, Y., Estrada, P.

(2018) J Am Chem Soc 140: 8124-8127

Released	2019-07-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Planktothrix agardhii
Macromolecule	PagF (protein)
Unique Ligands	GPP, MG

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7QCZ \| pdb_00007qcz	Download File View File

Structure of the orange carotenoid protein from Planktothrix agardhii binding canthaxanthin in the C2 space group

Andreeva, E.A., Hartmann, E., Schlichting, I., Colletier, J.-P.

(2022) Biochim Biophys Acta Bioenerg 1863: 148584-148584

Released	2022-07-06
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Planktothrix agardhii
Macromolecule	Orange carotenoid-binding protein (protein)
Unique Ligands	45D

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7QD0 \| pdb_00007qd0	Download File View File

Structure of the orange carotenoid protein from Planktothrix agardhii binding echinenone in the C2 space group

Andreeva, E.A., Hartmann, E., Schlichting, I., Colletier, J.-P.

(2022) Biochim Biophys Acta Bioenerg 1863: 148584-148584

Released	2022-07-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Planktothrix agardhii
Macromolecule	Orange carotenoid-binding protein (protein)
Unique Ligands	ACT, ARG, ECH, GOL

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7QD1 \| pdb_00007qd1	Download File View File

Structure of the orange carotenoid protein from Planktothrix agardhii binding echinenone in the P21 space group

Andreeva, E.A., Hartmann, E., Schlichting, I., Colletier, J.-P.

(2022) Biochim Biophys Acta Bioenerg 1863: 148584-148584

Released	2022-07-06
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Planktothrix agardhii
Macromolecule	Orange carotenoid-binding protein (protein)
Unique Ligands	ECH

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7QD2 \| pdb_00007qd2	Download File View File

Structure of the orange carotenoid protein from Planktothrix agardhii binding canthaxanthin in the P21 space group

Andreeva, E.A., Hartmann, E., Schlichting, I., Colletier, J.-P.

(2022) Biochim Biophys Acta Bioenerg 1863: 148584-148584

Released	2022-07-06
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Planktothrix agardhii
Macromolecule	Orange carotenoid-binding protein (protein)
Unique Ligands	45D, ACT, GOL