3GUD | pdb_00003gud

Crystal structure of a novel intramolecular chaperon


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 
    0.232 (Depositor), 0.229 (DCC) 
  • R-Value Work: 
    0.197 (Depositor), 0.201 (DCC) 
  • R-Value Observed: 
    0.199 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Crystal structure of an intramolecular chaperone mediating triple-beta-helix folding.

Schulz, E.C.Dickmanns, A.Urlaub, H.Schmitt, A.Muhlenhoff, M.Stummeyer, K.Schwarzer, D.Gerardy-Schahn, R.Ficner, R.

(2010) Nat Struct Mol Biol 17: 210-215

  • DOI: https://doi.org/10.1038/nsmb.1746
  • Primary Citation Related Structures: 
    3GUD, 3GW6

  • PubMed Abstract: 

    Protein folding is often mediated by molecular chaperones. Recently, a novel class of intramolecular chaperones has been identified in tailspike proteins of evolutionarily distant viruses, which require a C-terminal chaperone for correct folding. The highly homologous chaperone domains are interchangeable between pre-proteins and release themselves after protein folding. Here we report the crystal structures of two intramolecular chaperone domains in either the released or the pre-cleaved form, revealing the role of the chaperone domain in the formation of a triple-beta-helix fold. Tentacle-like protrusions enclose the polypeptide chains of the pre-protein during the folding process. After the assembly, a sensory mechanism for correctly folded beta-helices triggers a serine-lysine catalytic dyad to autoproteolytically release the mature protein. Sequence analysis shows a conservation of the intramolecular chaperones in functionally unrelated proteins sharing beta-helices as a common structural motif.


  • Organizational Affiliation
    • Abteilung für Molekulare Strukturbiologie, Institut für Mikrobiologie und Genetik, Georg-August-Universität Göttingen, Göttingen, Germany.

Macromolecule Content 

  • Total Structure Weight: 30.73 kDa 
  • Atom Count: 2,074 
  • Modeled Residue Count: 239 
  • Deposited Residue Count: 258 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Neck appendage protein
A, B
129Gaunavirus GA1Mutation(s): 0 
Gene Names: gene 12
UniProt
Find proteins for Q9FZW3 (Bacillus phage GA-1)
Explore Q9FZW3 
Go to UniProtKB:  Q9FZW3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9FZW3
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free:  0.232 (Depositor), 0.229 (DCC) 
  • R-Value Work:  0.197 (Depositor), 0.201 (DCC) 
  • R-Value Observed: 0.199 (Depositor) 
Space Group: P 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84.04α = 90
b = 84.04β = 90
c = 41.45γ = 120
Software Package:
Software NamePurpose
DNAdata collection
SHARPphasing
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-02-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2024-02-21
    Changes: Data collection, Database references, Derived calculations