6PA0

Structure of the G77A mutant in Sodium Chloride


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 
    0.233 (Depositor), 0.234 (DCC) 
  • R-Value Work: 
    0.196 (Depositor), 0.197 (DCC) 
  • R-Value Observed: 
    0.197 (Depositor) 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted DGAClick on this verticalbar to view detailsBest fitted F09Click on this verticalbar to view details

This is version 1.5 of the entry. See complete history


Literature

Structure, function, and ion-binding properties of a K+channel stabilized in the 2,4-ion-bound configuration.

Tilegenova, C.Cortes, D.M.Jahovic, N.Hardy, E.Hariharan, P.Guan, L.Cuello, L.G.

(2019) Proc Natl Acad Sci U S A 116: 16829-16834

  • DOI: https://doi.org/10.1073/pnas.1901888116
  • Primary Citation of Related Structures:  
    6NFU, 6NFV, 6PA0

  • PubMed Abstract: 

    Here, we present the atomic resolution crystallographic structure, the function, and the ion-binding properties of the KcsA mutants, G77A and G77C, that stabilize the 2,4-ion-bound configuration (i.e., water, K + , water, K + -ion-bound configuration) of the K + channel's selectivity filter. A full functional and thermodynamic characterization of the G77A mutant revealed wild-type-like ion selectivity and apparent K + -binding affinity, in addition to showing a lack of C-type inactivation gating and a marked reduction in its single-channel conductance. These structures validate, from a structural point of view, the notion that 2 isoenergetic ion-bound configurations coexist within a K + channel's selectivity filter, which fully agrees with the water-K + -ion-coupled transport detected by streaming potential measurements.


  • Organizational Affiliation

    Cell Physiology and Molecular Biophysics, Texas Tech University Health Sciences Center, Lubbock, TX 79430.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody HEAVY fragment219Mus musculusMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody LIGHT fragment212Mus musculusMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
pH-gated potassium channel KcsA103Streptomyces lividansMutation(s): 2 
Gene Names: kcsAskc1
Membrane Entity: Yes 
UniProt
Find proteins for P0A334 (Streptomyces lividans)
Explore P0A334 
Go to UniProtKB:  P0A334
Entity Groups  
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UniProt GroupP0A334
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free:  0.233 (Depositor), 0.234 (DCC) 
  • R-Value Work:  0.196 (Depositor), 0.197 (DCC) 
  • R-Value Observed: 0.197 (Depositor) 
Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 155.018α = 90
b = 155.018β = 90
c = 76.102γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted DGAClick on this verticalbar to view detailsBest fitted F09Click on this verticalbar to view details

Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States2R01GM097159-06
Welch FoundationUnited StatesBI-1949
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM122759
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesR21NS105863

Revision History  (Full details and data files)

  • Version 1.0: 2019-08-07
    Type: Initial release
  • Version 1.1: 2019-08-21
    Changes: Data collection, Database references
  • Version 1.2: 2019-08-28
    Changes: Data collection, Database references
  • Version 1.3: 2019-12-11
    Changes: Derived calculations
  • Version 1.4: 2019-12-18
    Changes: Author supporting evidence
  • Version 1.5: 2024-10-23
    Changes: Data collection, Database references, Derived calculations, Structure summary