6SP0 | pdb_00006sp0

Structure of Esco2 acetyltransferase in complex with CoA

PDB DOI: https://doi.org/10.2210/pdb6SP0/pdb

Classification: TRANSFERASE
Organism(s): Mus musculus
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2019-08-30 Released: 2020-07-01
Deposition Author(s): De, I., Pena, V.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.77 Å
R-Value Free:
0.198 (Depositor), 0.199 (DCC)
R-Value Work:
0.169 (Depositor), 0.171 (DCC)

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Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Alternative catalytic residues in the active site of Esco acetyltransferases

Ajam, T., De, I., Petkau, N., Whelan, G., Pena, V., Eichele, G.

(2020) Sci Rep

DOI: https://doi.org/10.1038/s41598-020-66795-z

Macromolecule Content

Total Structure Weight: 26.85 kDa
Atom Count: 1,813
Modeled Residue Count: 197
Deposited Residue Count: 226
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
N-acetyltransferase ESCO2	A	226	Mus musculus	Mutation(s): 0 Gene Names: Esco2 EC: 2.3.1
UniProt
Find proteins for Q8CIB9 (Mus musculus) Explore Q8CIB9 Go to UniProtKB: Q8CIB9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8CIB9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
COA (Subject of Investigation/LOI) Query on COA Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	COENZYME A C₂₁ H₃₆ N₇ O₁₆ P₃ S RGJOEKWQDUBAIZ-IBOSZNHHSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]
ZN (Subject of Investigation/LOI) Query on ZN Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.77 Å
R-Value Free: 0.198 (Depositor), 0.199 (DCC)
R-Value Work: 0.169 (Depositor), 0.171 (DCC)

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.68	α = 90
b = 52.68	β = 90
c = 107.47	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2020-07-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-07-01
Type: Initial release
Version 1.1: 2024-05-15
Changes: Advisory, Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.