7LS1

80S ribosome from mouse bound to eEF2 (Class II)

PDB DOI: https://doi.org/10.2210/pdb7LS1/pdb
EM Map EMD-23500: EMDB EMDataResource
NAKB: 7LS1

Classification: RIBOSOME
Organism(s): Mus musculus
Mutation(s): No

Deposited: 2021-02-17 Released: 2021-11-03
Deposition Author(s): Loerch, S., Smith, P.R., Kunder, N., Stanowick, A.D., Lou, T.-F., Campbell, Z.T.
Funding Organization(s): National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Functionally distinct roles for eEF2K in the control of ribosome availability and p-body abundance.

Smith, P.R., Loerch, S., Kunder, N., Stanowick, A.D., Lou, T.F., Campbell, Z.T.

(2021) Nat Commun 12: 6789-6789

PubMed: 34815424 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41467-021-27160-4
Primary Citation of Related Structures:
7LS1, 7LS2

PubMed Abstract:
Processing bodies (p-bodies) are a prototypical phase-separated RNA-containing granule. Their abundance is highly dynamic and has been linked to translation. Yet, the molecular mechanisms responsible for coordinate control of the two processes are unclear. Here, we uncover key roles for eEF2 kinase (eEF2K) in the control of ribosome availability and p-body abundance. eEF2K acts on a sole known substrate, eEF2, to inhibit translation. We find that the eEF2K agonist nelfinavir abolishes p-bodies in sensory neurons and impairs translation. To probe the latter, we used cryo-electron microscopy. Nelfinavir stabilizes vacant 80S ribosomes. They contain SERBP1 in place of mRNA and eEF2 in the acceptor site. Phosphorylated eEF2 associates with inactive ribosomes that resist splitting in vitro. Collectively, the data suggest that eEF2K defines a population of inactive ribosomes resistant to recycling and protected from degradation. Thus, eEF2K activity is central to both p-body abundance and ribosome availability in sensory neurons.

Organizational Affiliation

The University of Texas at Dallas, Department of Biological Sciences, Richardson, TX, USA.

Macromolecule Content

Total Structure Weight: 3,928.76 kDa
Atom Count: 227,065
Modelled Residue Count: 18,636
Deposited Residue Count: 21,702
Unique protein chains: 80
Unique nucleic acid chains: 5

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7	A [auth A1]	270	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P14148 (Mus musculus) Explore P14148 Go to UniProtKB: P14148
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UniProt Group	P14148
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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7a	B [auth B1]	266	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P12970 (Mus musculus) Explore P12970 Go to UniProtKB: P12970
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UniProt Group	P12970
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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L9	C [auth C1]	192	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P51410 (Mus musculus) Explore P51410 Go to UniProtKB: P51410
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UniProt Group	P51410
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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L10-like	D [auth D1]	214	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P86048 (Mus musculus) Explore P86048 Go to UniProtKB: P86048
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UniProt Group	P86048
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11	E [auth E1]	178	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CXW4 (Mus musculus) Explore Q9CXW4 Go to UniProtKB: Q9CXW4
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UniProt Group	Q9CXW4
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13	F [auth F1]	211	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P47963 (Mus musculus) Explore P47963 Go to UniProtKB: P47963
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UniProt Group	P47963
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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L14	G [auth G1]	217	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CR57 (Mus musculus) Explore Q9CR57 Go to UniProtKB: Q9CR57
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UniProt Group	Q9CR57
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L15	H [auth H1]	204	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CZM2 (Mus musculus) Explore Q9CZM2 Go to UniProtKB: Q9CZM2
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UniProt Group	Q9CZM2
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8	L [auth D2]	257	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62918 (Mus musculus) Explore P62918 Go to UniProtKB: P62918
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UniProt Group	P62918
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L3	M [auth E2]	403	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P27659 (Mus musculus) Explore P27659 Go to UniProtKB: P27659
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UniProt Group	P27659
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L4	N [auth F2]	419	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9D8E6 (Mus musculus) Explore Q9D8E6 Go to UniProtKB: Q9D8E6
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UniProt Group	Q9D8E6
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L5	O [auth G2]	297	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P47962 (Mus musculus) Explore P47962 Go to UniProtKB: P47962
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UniProt Group	P47962
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L6	P [auth H2]	296	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P47911 (Mus musculus) Explore P47911 Go to UniProtKB: P47911
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UniProt Group	P47911
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13a	Q [auth I2]	203	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P19253 (Mus musculus) Explore P19253 Go to UniProtKB: P19253
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UniProt Group	P19253
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L17	R [auth J2]	184	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CPR4 (Mus musculus) Explore Q9CPR4 Go to UniProtKB: Q9CPR4
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UniProt Group	Q9CPR4
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18	S [auth K2]	188	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P35980 (Mus musculus) Explore P35980 Go to UniProtKB: P35980
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UniProt Group	P35980
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L19	T [auth L2]	196	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P84099 (Mus musculus) Explore P84099 Go to UniProtKB: P84099
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UniProt Group	P84099
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18a	U [auth M2]	176	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62717 (Mus musculus) Explore P62717 Go to UniProtKB: P62717
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UniProt Group	P62717
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L21	V [auth N2]	160	Mus musculus	Mutation(s): 0
UniProt
Find proteins for O09167 (Mus musculus) Explore O09167 Go to UniProtKB: O09167
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UniProt Group	O09167
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L22	W [auth O2]	128	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P67984 (Mus musculus) Explore P67984 Go to UniProtKB: P67984
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UniProt Group	P67984
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23	X [auth P2]	140	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62830 (Mus musculus) Explore P62830 Go to UniProtKB: P62830
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UniProt Group	P62830
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L24	Y [auth Q2]	157	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q8BP67 (Mus musculus) Explore Q8BP67 Go to UniProtKB: Q8BP67
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UniProt Group	Q8BP67
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23a	Z [auth R2]	156	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62751 (Mus musculus) Explore P62751 Go to UniProtKB: P62751
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UniProt Group	P62751
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L26	AA [auth S2]	145	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P61255 (Mus musculus) Explore P61255 Go to UniProtKB: P61255
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UniProt Group	P61255
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27	BA [auth T2]	136	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P61358 (Mus musculus) Explore P61358 Go to UniProtKB: P61358
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UniProt Group	P61358
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27a	CA [auth U2]	148	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P14115 (Mus musculus) Explore P14115 Go to UniProtKB: P14115
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UniProt Group	P14115
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L29	DA [auth V2]	160	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P47915 (Mus musculus) Explore P47915 Go to UniProtKB: P47915
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UniProt Group	P47915
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L30	EA [auth W2]	115	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62889 (Mus musculus) Explore P62889 Go to UniProtKB: P62889
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UniProt Group	P62889
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L31	FA [auth X2]	125	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62900 (Mus musculus) Explore P62900 Go to UniProtKB: P62900
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UniProt Group	P62900
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L32	GA [auth Y2]	135	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62911 (Mus musculus) Explore P62911 Go to UniProtKB: P62911
IMPC: MGI:98038
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UniProt Group	P62911
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35a	HA [auth Z2]	110	Mus musculus	Mutation(s): 0
UniProt
Find proteins for O55142 (Mus musculus) Explore O55142 Go to UniProtKB: O55142
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UniProt Group	O55142
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L34	IA [auth a2]	117	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9D1R9 (Mus musculus) Explore Q9D1R9 Go to UniProtKB: Q9D1R9
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UniProt Group	Q9D1R9
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Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35	JA [auth b2]	123	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q6ZWV7 (Mus musculus) Explore Q6ZWV7 Go to UniProtKB: Q6ZWV7
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UniProt Group	Q6ZWV7
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Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36	KA [auth c2]	105	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P47964 (Mus musculus) Explore P47964 Go to UniProtKB: P47964
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UniProt Group	P47964
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Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37	LA [auth d2]	97	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9D823 (Mus musculus) Explore Q9D823 Go to UniProtKB: Q9D823
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UniProt Group	Q9D823
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Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L38	MA [auth e2]	70	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9JJI8 (Mus musculus) Explore Q9JJI8 Go to UniProtKB: Q9JJI8
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UniProt Group	Q9JJI8
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L39	NA [auth f2]	51	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62892 (Mus musculus) Explore P62892 Go to UniProtKB: P62892
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UniProt Group	P62892
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-60S ribosomal protein L40	OA [auth g2]	128	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62984 (Mus musculus) Explore P62984 Go to UniProtKB: P62984
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UniProt Group	P62984
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L41	PA [auth h2]	25	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62947 (Mus musculus) Explore P62947 Go to UniProtKB: P62947
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UniProt Group	P62947
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36a	QA [auth i2]	106	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P83882 (Mus musculus) Explore P83882 Go to UniProtKB: P83882
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UniProt Group	P83882
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37a	RA [auth j2]	92	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P61514 (Mus musculus) Explore P61514 Go to UniProtKB: P61514
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UniProt Group	P61514
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Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L28	SA [auth k2]	137	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P41105 (Mus musculus) Explore P41105 Go to UniProtKB: P41105
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UniProt Group	P41105
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Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3a	VA [auth p2]	264	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P97351 (Mus musculus) Explore P97351 Go to UniProtKB: P97351
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UniProt Group	P97351
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Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3	WA [auth q2]	243	Mus musculus	Mutation(s): 0 EC: 4.2.99.18
UniProt
Find proteins for P62908 (Mus musculus) Explore P62908 Go to UniProtKB: P62908
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UniProt Group	P62908
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Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S4, X isoform	XA [auth r2]	263	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62702 (Mus musculus) Explore P62702 Go to UniProtKB: P62702
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UniProt Group	P62702
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Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S11	YA [auth w2]	158	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62281 (Mus musculus) Explore P62281 Go to UniProtKB: P62281
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UniProt Group	P62281
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Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S17	ZA [auth z2]	135	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P63276 (Mus musculus) Explore P63276 Go to UniProtKB: P63276
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UniProt Group	P63276
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Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein SA	AB [auth o2]	295	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P14206 (Mus musculus) Explore P14206 Go to UniProtKB: P14206
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UniProt Group	P14206
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Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S5	BB [auth s2]	204	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P97461 (Mus musculus) Explore P97461 Go to UniProtKB: P97461
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UniProt Group	P97461
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Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S10	CB [auth v2]	165	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P63325 (Mus musculus) Explore P63325 Go to UniProtKB: P63325
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UniProt Group	P63325
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Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S15	DB [auth x2]	145	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62843 (Mus musculus) Explore P62843 Go to UniProtKB: P62843
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UniProt Group	P62843
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Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S16	EB [auth y2]	146	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P14131 (Mus musculus) Explore P14131 Go to UniProtKB: P14131
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UniProt Group	P14131
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Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S18	FB [auth A3]	152	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62270 (Mus musculus) Explore P62270 Go to UniProtKB: P62270
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UniProt Group	P62270
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Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S19	GB [auth B3]	145	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CZX8 (Mus musculus) Explore Q9CZX8 Go to UniProtKB: Q9CZX8
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UniProt Group	Q9CZX8
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Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S20	HB [auth C3]	119	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P60867 (Mus musculus) Explore P60867 Go to UniProtKB: P60867
IMPC: MGI:1914677
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UniProt Group	P60867
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Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S21	IB [auth D3]	83	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CQR2 (Mus musculus) Explore Q9CQR2 Go to UniProtKB: Q9CQR2
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UniProt Group	Q9CQR2
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Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S23	JB [auth E3]	143	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62267 (Mus musculus) Explore P62267 Go to UniProtKB: P62267
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UniProt Group	P62267
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Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S26	KB [auth F3]	115	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62855 (Mus musculus) Explore P62855 Go to UniProtKB: P62855
IMPC: MGI:1351628
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UniProt Group	P62855
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Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S28	LB [auth G3]	69	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62858 (Mus musculus) Explore P62858 Go to UniProtKB: P62858
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UniProt Group	P62858
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Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S29	MB [auth H3]	56	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62274 (Mus musculus) Explore P62274 Go to UniProtKB: P62274
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UniProt Group	P62274
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Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
Receptor of activated protein C kinase 1	NB [auth I3]	317	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P68040 (Mus musculus) Explore P68040 Go to UniProtKB: P68040
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UniProt Group	P68040
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Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S2	OB [auth J3]	293	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P25444 (Mus musculus) Explore P25444 Go to UniProtKB: P25444
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UniProt Group	P25444
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Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S6	PB [auth K3]	249	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62754 (Mus musculus) Explore P62754 Go to UniProtKB: P62754
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UniProt Group	P62754
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Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S9	QB [auth L3]	194	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q6ZWN5 (Mus musculus) Explore Q6ZWN5 Go to UniProtKB: Q6ZWN5
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UniProt Group	Q6ZWN5
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Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S12	RB [auth M3]	132	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63323 (Mus musculus) Explore P63323 Go to UniProtKB: P63323
IMPC: MGI:98105
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UniProt Group	P63323
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Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S13	SB [auth N3]	151	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62301 (Mus musculus) Explore P62301 Go to UniProtKB: P62301
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UniProt Group	P62301
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Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S14	TB [auth O3]	151	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62264 (Mus musculus) Explore P62264 Go to UniProtKB: P62264
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UniProt Group	P62264
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Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S15a	UB [auth P3]	130	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62245 (Mus musculus) Explore P62245 Go to UniProtKB: P62245
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UniProt Group	P62245
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Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S24	VB [auth Q3]	133	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62849 (Mus musculus) Explore P62849 Go to UniProtKB: P62849
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UniProt Group	P62849
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Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S25	WB [auth R3]	125	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62852 (Mus musculus) Explore P62852 Go to UniProtKB: P62852
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UniProt Group	P62852
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Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S27-like	XB [auth S3]	84	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q6ZWY3 (Mus musculus) Explore Q6ZWY3 Go to UniProtKB: Q6ZWY3
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UniProt Group	Q6ZWY3
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Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S30	YB [auth T3]	133	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62862 (Mus musculus) Explore P62862 Go to UniProtKB: P62862
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UniProt Group	P62862
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Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-40S ribosomal protein S27a	ZB [auth U3]	156	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62983 (Mus musculus) Explore P62983 Go to UniProtKB: P62983
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UniProt Group	P62983
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Entity ID: 79
Molecule	Chains	Sequence Length	Organism	Details	Image
Elongation factor 2	AC [auth m]	858	Mus musculus	Mutation(s): 0 EC: 3.6.5
UniProt
Find proteins for P58252 (Mus musculus) Explore P58252 Go to UniProtKB: P58252
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UniProt Group	P58252
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Entity ID: 80
Molecule	Chains	Sequence Length	Organism	Details	Image
60S acidic ribosomal protein P0	BC [auth j]	317	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P14869 (Mus musculus) Explore P14869 Go to UniProtKB: P14869
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UniProt Group	P14869
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Entity ID: 81
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L12	CC [auth k]	165	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P35979 (Mus musculus) Explore P35979 Go to UniProtKB: P35979
IMPC: MGI:98002
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UniProt Group	P35979
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Entity ID: 82
Molecule	Chains	Sequence Length	Organism	Details	Image
Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein	DC [auth A]	386	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9CY58 (Mus musculus) Explore Q9CY58 Go to UniProtKB: Q9CY58
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UniProt Group	Q9CY58
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Entity ID: 83
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S7	EC [auth t]	194	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62082 (Mus musculus) Explore P62082 Go to UniProtKB: P62082
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UniProt Group	P62082
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Entity ID: 84
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S8	FC [auth u]	208	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P62242 (Mus musculus) Explore P62242 Go to UniProtKB: P62242
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UniProt Group	P62242
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Entity ID: 85
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L10a	GC [auth L1]	217	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P53026 (Mus musculus) Explore P53026 Go to UniProtKB: P53026
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UniProt Group	P53026
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Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GDP Query on GDP Download Ideal Coordinates CCD File SDF format, chain PC [auth m] MOL2 format, chain PC [auth m] mmCIF format, chain PC [auth m]	PC [auth m]	GUANOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₁ P₂ QGWNDRXFNXRZMB-UUOKFMHZSA-N		Interactions Focus chain PC [auth m] Interactions & Density Focus chain PC [auth m]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain HC [auth d2] SDF format, chain IC [auth g2] SDF format, chain JC [auth i2] SDF format, chain KC [auth j2] SDF format, chain LC [auth F3] SDF format, chain MC [auth H3] SDF format, chain OC [auth U3] MOL2 format, chain HC [auth d2] MOL2 format, chain IC [auth g2] MOL2 format, chain JC [auth i2] MOL2 format, chain KC [auth j2] MOL2 format, chain LC [auth F3] MOL2 format, chain MC [auth H3] MOL2 format, chain OC [auth U3] mmCIF format, chain HC [auth d2] mmCIF format, chain IC [auth g2] mmCIF format, chain JC [auth i2] mmCIF format, chain KC [auth j2] mmCIF format, chain LC [auth F3] mmCIF format, chain MC [auth H3] mmCIF format, chain OC [auth U3]	HC [auth d2] IC [auth g2] JC [auth i2] KC [auth j2] LC [auth F3] HC [auth d2], IC [auth g2], JC [auth i2], KC [auth j2], LC [auth F3], MC [auth H3], OC [auth U3]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain HC [auth d2] Focus chain IC [auth g2] Focus chain JC [auth i2] Focus chain KC [auth j2] Focus chain LC [auth F3] Focus chain MC [auth H3] Focus chain OC [auth U3] Interactions & Density Focus chain HC [auth d2] Focus chain IC [auth g2] Focus chain JC [auth i2] Focus chain KC [auth j2] Focus chain LC [auth F3] Focus chain MC [auth H3] Focus chain OC [auth U3]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain NC [auth H3] MOL2 format, chain NC [auth H3] mmCIF format, chain NC [auth H3]	NC [auth H3]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain NC [auth H3] Interactions & Density Focus chain NC [auth H3]

Modified Residues 2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MLZ Query on MLZ	N [auth F2]	L-PEPTIDE LINKING	C₇ H₁₆ N₂ O₂		LYS
DDE Query on DDE	AC [auth m]	L-PEPTIDE LINKING	C₁₃ H₂₄ N₅ O₃		HIS

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX
RECONSTRUCTION	cisTEM

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2021-11-03

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)	United States	R01NS100788
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)	United States	R01NS114018

Revision History (Full details and data files)

Version 1.0: 2021-11-03
Type: Initial release
Version 1.1: 2021-12-08
Changes: Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Entity ID: 9
Molecule	Chains	Length	Organism	Image
28S rRNA	I [auth A2]	4,731	Mus musculus
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Deposit Data

Help and Resources

7LS1

80S ribosome from mouse bound to eEF2 (Class II)

Functionally distinct roles for eEF2K in the control of ribosome availability and p-body abundance.

Entity ID: 1

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