Crystal structure of the human vitamin D receptor ligand binding domain complexed with (23R)-F-25(OH)D3
Kakuda, S.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Vitamin D3 receptor | 306 | Homo sapiens | Mutation(s): 0  Gene Names: VDR, NR1I1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P11473 (Homo sapiens) Explore P11473  Go to UniProtKB:  P11473 | |||||
PHAROS:  P11473 GTEx:  ENSG00000111424  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P11473 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SV0 (Subject of Investigation/LOI) Query on SV0 | B [auth A] | (1~{S},3~{Z})-3-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-1-[(2~{R},4~{R})-4-fluoranyl-6-methyl-6-oxidanyl-heptan-2-yl]-7~{a}-methyl-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexan-1-ol C27 H43 F O2 GFRHQHOVEZIWBD-VCAQAZSGSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 44.723 | α = 90 |
b = 51.363 | β = 90 |
c = 132.102 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
XDS | data scaling |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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Not funded | -- |