Structure of the complete Vaccinia DNA-dependent RNA polymerase complex at 2.65A resolution
Grimm, C., Bartuli, J., Fischer, U.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 147 kDa polypeptide | 1,286 | Vaccinia virus | Mutation(s): 3 Gene Names: OPG105, RPO147, J6R EC: 2.7.7.6 | ![]() | |
UniProt | |||||
Find proteins for P20504 (Vaccinia virus (strain Copenhagen)) Explore P20504 Go to UniProtKB: P20504 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20504 | ||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 133 kDa polypeptide | 1,164 | Vaccinia virus | Mutation(s): 2 Gene Names: OPG151, RPO132, A24R EC: 2.7.7.6 | ![]() | |
UniProt | |||||
Find proteins for P68694 (Vaccinia virus (strain Copenhagen)) Explore P68694 Go to UniProtKB: P68694 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68694 | ||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 35 kDa subunit | 305 | Vaccinia virus | Mutation(s): 1 Gene Names: OPG156, RPO35, A29L EC: 2.7.7.6 | ![]() | |
UniProt | |||||
Find proteins for P21087 (Vaccinia virus (strain Copenhagen)) Explore P21087 Go to UniProtKB: P21087 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P21087 | ||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 22 kDa subunit | D [auth E] | 185 | Vaccinia virus | Mutation(s): 0 Gene Names: OPG103, RPO22, J4R EC: 2.7.7.6 | ![]() |
UniProt | |||||
Find proteins for P68608 (Vaccinia virus (strain Copenhagen)) Explore P68608 Go to UniProtKB: P68608 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68608 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 18 kDa subunit | E [auth G] | 161 | Vaccinia virus | Mutation(s): 0 Gene Names: OPG119, RPO18, D7R EC: 2.7.7.6 | ![]() |
UniProt | |||||
Find proteins for P21034 (Vaccinia virus (strain Copenhagen)) Explore P21034 Go to UniProtKB: P21034 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P21034 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA polymerase-associated transcription-specificity factor RAP94 | F [auth I] | 795 | Vaccinia virus | Mutation(s): 0 Gene Names: OPG109, RAP94, H4L | ![]() |
UniProt | |||||
Find proteins for P68439 (Vaccinia virus (strain Copenhagen)) Explore P68439 Go to UniProtKB: P68439 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68439 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 7 kDa subunit | G [auth J] | 63 | Vaccinia virus | Mutation(s): 0 Gene Names: OPG090, RPO7, G5.5R EC: 2.7.7.6 | ![]() |
UniProt | |||||
Find proteins for P68315 (Vaccinia virus (strain Copenhagen)) Explore P68315 Go to UniProtKB: P68315 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68315 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Early transcription factor 82 kDa subunit | H [auth K] | 710 | Vaccinia virus | Mutation(s): 1 Gene Names: OPG133, VETFL, A7L | ![]() |
UniProt | |||||
Find proteins for P20635 (Vaccinia virus (strain Copenhagen)) Explore P20635 Go to UniProtKB: P20635 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20635 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
mRNA-capping enzyme regulatory subunit OPG124 | I [auth L] | 287 | Vaccinia virus | Mutation(s): 1 Gene Names: OPG124, D12L | ![]() |
UniProt | |||||
Find proteins for P20980 (Vaccinia virus (strain Copenhagen)) Explore P20980 Go to UniProtKB: P20980 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20980 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
mRNA-capping enzyme catalytic subunit | J [auth O] | 844 | Vaccinia virus | Mutation(s): 2 Gene Names: OPG113, D1R EC: 3.6.1.74 (PDB Primary Data), 2.7.7.50 (PDB Primary Data), 2.1.1.56 (PDB Primary Data) | ![]() |
UniProt | |||||
Find proteins for P20979 (Vaccinia virus (strain Copenhagen)) Explore P20979 Go to UniProtKB: P20979 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20979 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Core protein OPG073 | K [auth Q], L [auth R] | 129 | Vaccinia virus | Mutation(s): 0 Gene Names: OPG073, E11L | ![]() |
UniProt | |||||
Find proteins for P68449 (Vaccinia virus (strain Copenhagen)) Explore P68449 Go to UniProtKB: P68449 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68449 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 30 kDa polypeptide | M [auth S] | 259 | Vaccinia virus | Mutation(s): 0 Gene Names: OPG066, RPO30, E4L EC: 2.7.7.6 | ![]() |
UniProt | |||||
Find proteins for P21082 (Vaccinia virus (strain Copenhagen)) Explore P21082 Go to UniProtKB: P21082 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P21082 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nucleoside triphosphatase I | O [auth Y] | 631 | Vaccinia virus | Mutation(s): 1 Gene Names: OPG123, NPH1, D11L EC: 3.6.1.15 | ![]() |
UniProt | |||||
Find proteins for P20637 (Vaccinia virus (strain Copenhagen)) Explore P20637 Go to UniProtKB: P20637 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20637 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 19 kDa subunit | P [auth F] | 164 | Vaccinia virus | Mutation(s): 0 Gene Names: OPG131, RPO19, A5R EC: 2.7.7.6 | ![]() |
UniProt | |||||
Find proteins for P68610 (Vaccinia virus (strain Copenhagen)) Explore P68610 Go to UniProtKB: P68610 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68610 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | R [auth A], S [auth A], T [auth B], U [auth I] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | Q [auth A], V [auth U], W [auth U], X [auth U] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
SEP Query on SEP | M [auth S] | L-PEPTIDE LINKING | C3 H8 N O6 P | SER |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | 1.21rc1_5058 |
Funding Organization | Location | Grant Number |
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German Research Foundation (DFG) | Germany | -- |