8YVI

Cryo-EM structure of carboxysomal midi-shell: icosahedral assembly from CsoS4A/4B/1A/1B/1C/1D and CsoS2 C-terminal co-expression (T = 13)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.93 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Molecular principles of the assembly and construction of a carboxysome shell.

Wang, P.Li, J.Li, T.Li, K.Ng, P.C.Wang, S.Chriscoli, V.Basle, A.Marles-Wright, J.Zhang, Y.Z.Liu, L.N.

(2024) Sci Adv 10: eadr4227-eadr4227

  • DOI: https://doi.org/10.1126/sciadv.adr4227
  • Primary Citation of Related Structures:  
    8YVC, 8YVD, 8YVE, 8YVF, 8YVI, 8YXU, 9F0H

  • PubMed Abstract: 

    Intracellular compartmentalization enhances biological reactions, crucial for cellular function and survival. An example is the carboxysome, a bacterial microcompartment for CO 2 fixation. The carboxysome uses a polyhedral protein shell made of hexamers, pentamers, and trimers to encapsulate Rubisco, increasing CO 2 levels near Rubisco to enhance carboxylation. Despite their role in the global carbon cycle, the molecular mechanisms behind carboxysome shell assembly remain unclear. Here, we present a structural characterization of α-carboxysome shells generated from recombinant systems, which contain all shell proteins and the scaffolding protein CsoS2. Atomic-resolution cryo-electron microscopy of the shell assemblies, with a maximal size of 54 nm, unveil diverse assembly interfaces between shell proteins, detailed interactions of CsoS2 with shell proteins to drive shell assembly, and the formation of heterohexamers and heteropentamers by different shell protein paralogs, facilitating the assembly of larger empty shells. Our findings provide mechanistic insights into the construction principles of α-carboxysome shells and the role of CsoS2 in governing α-carboxysome assembly and functionality.


  • Organizational Affiliation

    MOE Key Laboratory of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Major carboxysome shell protein CsoS1A
A, B, C, D, E
98Halothiobacillus neapolitanusMutation(s): 0 
Gene Names: csoS1AcsoS1Hneap_0915
UniProt
Find proteins for P45689 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
Explore P45689 
Go to UniProtKB:  P45689
Entity Groups  
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UniProt GroupP45689
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Carboxysome shell vertex protein CsoS4A83Halothiobacillus neapolitanusMutation(s): 0 
Gene Names: csoS4AorfAHneap_0918
UniProt
Find proteins for O85043 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
Explore O85043 
Go to UniProtKB:  O85043
Entity Groups  
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UniProt GroupO85043
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Carboxysome assembly protein CsoS2BN [auth X],
O [auth Y]
279Halothiobacillus neapolitanusMutation(s): 0 
Gene Names: csoS2Hneap_0920
UniProt
Find proteins for O85041 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
Explore O85041 
Go to UniProtKB:  O85041
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO85041
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.93 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32090109

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release