Annotations: 8DNX

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth B]	SCOP2B Superfamily	Protein translocase subunit SecE-like	8098782	3002174	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	SecY-like	8098818	3000333	SCOP2B (2022-06-29)

Gene Product Annotation Gene Product Annotation

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B]	Protein transport protein Sec61 subunit gamma	macromolecule transmembrane transporter activity protein transporter activity protein transmembrane transporter activity transporter activity transmembrane transporter activity ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding	protein localization establishment of protein localization cellular localization nitrogen compound transport transport protein targeting localization protein transmembrane transport cellular macromolecule localization establishment of localization in cell post-translational protein targeting to membrane, translocation establishment of protein localization to endoplasmic reticulum protein localization to endoplasmic reticulum establishment of protein localization to membrane protein localization establishment of protein localization cellular localization nitrogen compound transport transport protein targeting localization protein transmembrane transport cellular macromolecule localization establishment of localization in cell post-translational protein targeting to membrane, translocation establishment of protein localization to endoplasmic reticulum protein localization to endoplasmic reticulum establishment of protein localization to membrane intracellular protein transmembrane transport organic substance transport intracellular transport post-translational protein targeting to endoplasmic reticulum membrane localization within membrane protein localization to membrane establishment of localization protein targeting to membrane transmembrane transport establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle cellular process intracellular protein transport protein targeting to ER	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane membrane-bounded organelle protein-containing complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane membrane-bounded organelle protein-containing complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane Ssh1 translocon complex organelle subcompartment intracellular membrane-bounded organelle translocon complex rough endoplasmic reticulum membrane organelle endoplasmic reticulum organelle membrane
B [auth C]	Protein transport protein Sec61 subunit beta	ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding protein binding growth factor binding epidermal growth factor binding hormone binding RNA binding organic cyclic compound binding nucleic acid binding heterocyclic compound binding	cellular response to stimulus response to organic substance catabolic process response to stimulus proteolysis involved in protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process ERAD pathway organic substance metabolic process cellular response to stress modification-dependent macromolecule catabolic process proteolysis response to stress nitrogen compound metabolic process cellular response to stimulus response to organic substance catabolic process response to stimulus proteolysis involved in protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process ERAD pathway organic substance metabolic process cellular response to stress modification-dependent macromolecule catabolic process proteolysis response to stress nitrogen compound metabolic process protein metabolic process response to endoplasmic reticulum stress organonitrogen compound catabolic process organonitrogen compound metabolic process response to organonitrogen compound primary metabolic process proteasomal protein catabolic process response to nitrogen compound protein catabolic process ubiquitin-dependent ERAD pathway modification-dependent protein catabolic process response to chemical ubiquitin-dependent protein catabolic process metabolic process cellular process macromolecule metabolic process organic substance catabolic process protein localization establishment of protein localization cellular localization nitrogen compound transport transport protein targeting localization protein transmembrane transport cellular macromolecule localization establishment of localization in cell post-translational protein targeting to membrane, translocation establishment of protein localization to endoplasmic reticulum protein localization to endoplasmic reticulum establishment of protein localization to membrane intracellular protein transmembrane transport organic substance transport intracellular transport post-translational protein targeting to endoplasmic reticulum membrane localization within membrane protein localization to membrane establishment of localization protein targeting to membrane transmembrane transport establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle intracellular protein transport protein targeting to ER protein exit from endoplasmic reticulum endoplasmic reticulum to cytosol transport retrograde protein transport, ER to cytosol SRP-dependent cotranslational protein targeting to membrane cotranslational protein targeting to membrane SRP-dependent cotranslational protein targeting to membrane, translocation	membrane-bounded organelle protein-containing complex intracellular anatomical structure Sec61 translocon complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane organelle subcompartment membrane-bounded organelle protein-containing complex intracellular anatomical structure Sec61 translocon complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane organelle subcompartment membrane cellular anatomical entity intracellular membrane-bounded organelle translocon complex rough endoplasmic reticulum membrane organelle endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum quality control compartment endoplasmic reticulum Sec complex cytosol
C [auth A]	Protein transport protein Sec61 subunit alpha isoform 1	macromolecule transmembrane transporter activity protein transporter activity protein transmembrane transporter activity transporter activity transmembrane transporter activity amide binding signal sequence binding binding peptide binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding calcium channel activity monoatomic cation transmembrane transporter activity macromolecule transmembrane transporter activity protein transporter activity protein transmembrane transporter activity transporter activity transmembrane transporter activity amide binding signal sequence binding binding peptide binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding calcium channel activity monoatomic cation transmembrane transporter activity monoatomic ion channel activity salt transmembrane transporter activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity channel activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity metal ion transmembrane transporter activity	cellular component organization organelle organization cellular process cellular component organization or biogenesis endoplasmic reticulum organization endomembrane system organization protein localization cellular localization establishment of protein localization nitrogen compound transport transport protein targeting localization SRP-dependent cotranslational protein targeting to membrane cellular component organization organelle organization cellular process cellular component organization or biogenesis endoplasmic reticulum organization endomembrane system organization protein localization cellular localization establishment of protein localization nitrogen compound transport transport protein targeting localization SRP-dependent cotranslational protein targeting to membrane establishment of localization in cell cellular macromolecule localization cotranslational protein targeting to membrane establishment of protein localization to endoplasmic reticulum protein localization to endoplasmic reticulum establishment of protein localization to membrane organic substance transport intracellular transport localization within membrane protein localization to membrane establishment of localization protein targeting to membrane establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle intracellular protein transport protein targeting to ER developmental process multicellular organismal process pronephric nephron development animal organ development renal system development multicellular organism development pronephros development anatomical structure development nephron development kidney development system development membrane organization protein insertion into membrane protein insertion into ER membrane post-translational protein targeting to endoplasmic reticulum membrane protein transmembrane transport post-translational protein targeting to membrane, translocation intracellular protein transmembrane transport transmembrane transport SRP-dependent cotranslational protein targeting to membrane, translocation	membrane-bounded organelle protein-containing complex intracellular anatomical structure Sec61 translocon complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane organelle subcompartment membrane-bounded organelle protein-containing complex intracellular anatomical structure Sec61 translocon complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane organelle subcompartment membrane cellular anatomical entity intracellular membrane-bounded organelle translocon complex rough endoplasmic reticulum membrane organelle endoplasmic reticulum cytoplasm organelle membrane
D	Cotransin analogue peptide inhibitor	none	none	none

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth B], B [auth C], C [auth A]	OPM	Transmembrane	Alpha-helical polytopic	General secretory pathway (Sec)	Protein translocase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth B], B [auth C], C [auth A]	PDBTM	Annotated as membrane protein by PDBTM

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
D	MAA	Parent Component: ALA RESID: AA0061 PSI-MOD : N-methyl-L-alanine MOD:00070
D	MLE	Parent Component: LEU RESID: AA0061 , AA0337 PSI-MOD : N-methyl-L-alanine MOD:00070 , N-methyl-L-leucine MOD:00342
D	SZF	RESID: AA0061 , AA0337
D	SZR	RESID: AA0061 , AA0337
D	T09	RESID: AA0061 , AA0337

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.