7ZBQ
Structure of the ADP-ribosyltransferase TccC3HVR from Photorhabdus Luminescens
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HCCH-TOCSY | 500 uM [U-13C; U-15N] TcART, 20 mM d11-Tris, 150 mM sodium chloride | 100% D2O | 150 mM | 7.8 | 1 atm | 280 | Bruker AVANCE III 600 |
2 | 3D HNCA | 500 uM [U-13C; U-15N] TcART, 20 mM HEPES, 150 mM sodium chloride | 90% H2O/10% D2O | 150 mM | 7.8 | 1 atm | 280 | Bruker AVANCE III 600 |
3 | 2D 1H-1H NOESY | 500 uM [U-13C; U-15N] TcART, 20 mM d11-Tris, 150 mM sodium chloride | 100% D2O | 150 mM | 7.8 | 1 atm | 280 | Bruker AVANCE III 600 |
4 | 3D 1H-13C NOESY aliphatic | 500 uM [U-13C; U-15N] TcART, 20 mM d11-Tris, 150 mM sodium chloride | 100% D2O | 150 mM | 7.8 | 1 atm | 280 | Bruker AVANCE III 600 |
5 | 3D 1H-13C NOESY aliphatic | 500 uM [U-13C; U-15N] TcART, 20 mM HEPES, 150 mM sodium chloride | 90% H2O/10% D2O | 150 mM | 7.8 | 1 atm | 280 | Bruker AVANCE II 750 |
7 | 3D 1H-13C NOESY aromatic | 500 uM [U-13C; U-15N] TcART, 20 mM HEPES, 150 mM sodium chloride | 90% H2O/10% D2O | 150 mM | 7.8 | 1 atm | 280 | Bruker AVANCE II 750 |
6 | 3D 1H-15N NOESY | 500 uM [U-13C; U-15N] TcART, 20 mM HEPES, 150 mM sodium chloride | 90% H2O/10% D2O | 150 mM | 7.8 | 1 atm | 280 | Bruker AVANCE II 750 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE II | 750 |
2 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | standard aria/cns water refinement protocol | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
5 | collection | TopSpin | 3.5pl6 | Bruker Biospin |
6 | processing | TopSpin | 3.5pl6 | Bruker Biospin |
3 | chemical shift assignment | CcpNmr Analysis | 2.4.2 | CCPN |
4 | peak picking | CcpNmr Analysis | 2.4.2 | CCPN |
2 | structure calculation | ARIA | 2.3.2 | Linge, O'Donoghue and Nilges |
1 | refinement | CNS | 1.21 | Brunger A. T. et.al. |