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Papers Published in Special Issue of Journal of Molecular Biology

11/24 PDB101 News

This special issue of <I>Journal of Molecular Biology</I> provides a set of reports on computational resources for molecular biologyThis special issue of Journal of Molecular Biology provides a set of reports on computational resources for molecular biology

Read how the ModelCIF data framework (details) and RCSB PDB APIs (documentation) each support exploration of Computed Structure Models (CSMs).

ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models
B. Vallat, G. Tauriello, S. Bienert, J. Haas, B.M. Webb, A. Žídek, W. Zheng, E. Peisach, D.W. Piehl, I. Anischanka, I. Sillitoe, J. Tolchard, M. Varadi, D. Baker, C. Orengo, Y. Zhang, J.C. Hoch, G. Kurisu, A. Patwardhan, S. Velankar, S.K. Burley, A. Sali, T. Schwede, H.M. Berman, J.D. Westbrook
(2023) Journal of Molecular Biology 435: 168021 doi: 10.1016/j.jmb.2023.168021

RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances
S. Bittrich, C. Bhikadiya, C. Bi, H. Chao, J.M. Duarte, S. Dutta , M. Fayazi, J. Henry, I. Khokhriakov, R. Lowe, D.W. Piehl, J. Segura, B. Vallat, M. Voigt, J.D. Westbrook, S.K. Burley, Y. Rose
(2023) Journal of Molecular Biology 435: 167994 doi: 10.1016/j.jmb.2023.167994

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